SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45760

Length: 428 nt

UniGene Fasta

>sp_v2.0_unigene45760
AAGAAGGTGGATGCTAGCAAAGCAGAGCGAGTAGATGCTACATTATACAAATTGCTCATCAGGTCGTTGATGCAATTGTTCAACACACAGCCTGCTATTTGTTTTTCAGTAAACTAGTTGAGTCAGTGCATGATGGAACTGACCAAAGTTAATCGGGTTGCTATGAAGCATGTTTTGAGGTATCTCAAAGGCACAACAGATTATGGATTGTGGTACAGAGAGGTTAATGGAGTGAGGCTTGAGGGCTTCGCATATGCAAATTGGGTAGGGTGCTCCACAGATCGGAAGAGTACGTCAAGTTGCGTCTTCAGCATTGGGTCAGTAATTGTTTCCTGGTTTTATAAGAAGCAGAGATCAGTTGCACTTAGTTCAACAGAGGTTGAGTACATGTCTAGACCGGTTTGGCAGTGTACGAAGTTATCTGGATA

Ace file of the UniGene sp_v2.0_unigene45760

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ	-	-	2.0e-25	46%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	42%
Blast2go	retrotransposon unclassified	-	-	4.18526e-29	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Integrase, catalytic core	IPR001584	-	0.0	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 142 - 542

Fln protein: KKVDASKAERVDATLYKLLIRSLMQLFNTQPAICFSVN*LSQCMMELTKVNRVAMKHVLRYLKGTTDYGLWYREVNGVRLEGFAYANWVGCSTDRKSTSSCVFSIGSVIVSWFYKKQRSVALSSTEVEYMSRPVWQCTKLSG

Protein Length: 143

Fln nts: AAGAAGGTGGATGCTAGCAAAGCAGAGCGAGTAGATGCTACATTATACAAATTGCTCATCAGGTCGTTGATGCAATTGTTCAACACACAGCCTGCTATTTGTTTTTCAGTAAACTAGTTGAGTCAGTGCATGATGGAACTGACCAAAGTTAATCGGGTTGCTATGAAGCATGTTTTGAGGTATCTCAAAGGCACAACAGATTATGGATTGTGGTACAGAGAGGTTAATGGAGTGAGGCTTGAGGGCTTCGCATATGCAAATTGGGTAGGGTGCTCCACAGATCGGAAGAGTACGTCAAGTTGCGTCTTCAGCATTGGGTCAGTAATTGTTTCCTGGTTTTATAAGAAGCAGAGATCAGTTGCACTTAGTTCAACAGAGGTTGAGTACATGTCTAGACCGGTTTGGCAGTGTACGAAGTTATCTGGATA

Fln Alignment:

AllPineV4_c43919___YKLLIRSLMQ-LFNTQPAICFSVN*LSQCMMELTKVNRVAMKHVLRYLKGTTDYGLWYREVNG----VRLEGFAYANWVGCSTDRKSTSSCVFSIGSVIVSWFYKKQRSVALSSTEVEYM
Q9M5J7_______________YASAVGSLMYAMVCTRPDIAHAVGFLSRYMSKLGKEHWTTVKRVFRYLHGTTSYGLCYQGRSGLDRVVDIHGFVDADWVGDLDHIRSTSGYVFNLFGGAISWMSKIQALVALSTTEAEYM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain