SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45732

Length: 272 nt

UniGene Fasta

>sp_v2.0_unigene45732
TAAATTGTATGAAATCGCTAGCTCCGATTCGCACTGTCGGTCCTGTCATACCCTCGGCTTTCTTGGACGGACGGAATCCCGAAGATACAGACCCTGGGGCACACTTGTGGAAAACCATGAACTGCATGGATTGGCTGAATACGAAGGAACCCGCAAGCGTCGTGTATGTTTCTTTCGGAAGCCTGGCTGTTCTTTCAAAAGACAAATGCATGAGATTGCTCTTGGGCTGAAGGCCAGTGGATATTCTTTCCTGTGGGTTGTTCGTCCACCTT

Ace file of the UniGene sp_v2.0_unigene45732

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative glucosyltransferase [Arabidopsis thaliana]	-	-	3.0e-16	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	udp-glucoronosyl udp-glucosyl transferase family protein	-	-	8.44892e-35	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to abscisic acid stimulus	GO:0071215	Biological Process	8.44892e-35	70%
Blast2go	cellular response to hydrogen peroxide	GO:0070301	Biological Process	8.44892e-35	70%
Blast2go	shoot morphogenesis	GO:0010016	Biological Process	8.44892e-35	70%
Blast2go	cellular hyperosmotic salinity response	GO:0071475	Biological Process	8.44892e-35	70%
Blast2go	cellular response to water deprivation	GO:0042631	Biological Process	8.44892e-35	70%
Blast2go	indolebutyric acid metabolic process	GO:0080024	Biological Process	8.44892e-35	70%
Blast2go	abscisic acid glucosyltransferase activity	GO:0010294	Molecular Function	8.44892e-35	70%
Blast2go	indole-3-butyrate beta-glucosyltransferase activity	GO:0052638	Biological Process	8.44892e-35	70%
Blast2go	response to karrikin	GO:0080167	Biological Process	8.44892e-35	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKT4

Fln msg: Overlapping hits, possible frame ERROR between 227 and 197, Distance to subject end: 167 aas, your sequence is shorter than subject: 90 - 490

Fln protein: NCMKSLAPIRTVGPVIPSAFLDGRNPEDTDPGAHLWKTMNCMDWLNTKEPASVVYVSFGSLAVLxxxxxxxxxxxxKASGYSFLWVVRPP

Protein Length: 91

Fln nts: TAAATTGTATGAAATCGCTAGCTCCGATTCGCACTGTCGGTCCTGTCATACCCTCGGCTTTCTTGGACGGACGGAATCCCGAAGATACAGACCCTGGGGCACACTTGTGGAAAACCATGAACTGCATGGATTGGCTGAATACGAAGGAACCCGCAAGCGTCGTGTATGTTTCTTTCGGAAGCCTGGCTGTTCTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGGCCAGTGGATATTCTTTCCTGTGGGTTGTTCGTCCACCTT

Fln Alignment:

AllPineV4_c43885___NCMKSLAPIRTVGPVIPSAFLDGRNPEDTDPGAHLWKTMNCMDWLNTKEPASVVYVSFGSLAVLSxxxxxxxxxxLKASGYSFLWVVRPP
B8LKT4_______________NSMKSIAPLRTVGPLIPSAFLDGRNPGDTDCGAHLWKTTNCMDWLNTKEPASVVYVSFGSLAVLSxxxxxxxxxxLKASGYSFIWVIRPP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain