SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45688

Length: 319 nt

UniGene Fasta

>sp_v2.0_unigene45688
ATGGGGATTGATCCTCTCGGCAGACAGAAAGTTCTTTCGCTTTGTTTTTCTTGTTTTCACATATAGGCAGTCTCTCGCCCGTCCTCGTCGAAGTAATTGGAAGCAGCACAGCAGCAGCCATGGTTCAAATCACAGAATTCCGAGTGGTGATGCCCCTGTCTTTGGAAGAGTATCAAATAGGACAGATGTACATGGTCATGAAGCTGCAGCAACAGAGCACGACAGGAGATGAAGGAGTTGAGGTATTAGAGAACAGACCCTTTGAAGATGATGAATTTGGGAGGGGCCAATACACATATAAGGTCTATCGTCTACAAAG

Ace file of the UniGene sp_v2.0_unigene45688

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phosphatidylinositol transfer protein alpha isoform [Danio rerio] gb\|AAH44192.1\| Phosphatidylinositol transfer protein, alpha [Danio rerio] gb\|AAI63953.1\| Pitpna protein [Danio rerio]	-	-	2.0e-14	53%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	78%
Blast2go	phosphatidylinositol transfer alpha	-	-	2.57068e-28	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	axonogenesis	GO:0007409	Biological Process	2.57068e-28	78%
Blast2go	phospholipid transport	GO:0015914	Biological Process	2.57068e-28	78%
Blast2go	phospholipid binding	GO:0005543	Molecular Function	2.57068e-28	78%
Blast2go	cytosol	GO:0005829	Cellular Component	2.57068e-28	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphatidylinositol transfer protein	IPR001666	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6GTX8

Fln msg: Distance to subject end: 235 aas, your sequence is shorter than subject: 66 - 292

Fln protein: MVQITEFRVVMPLSLEEYQIGQMYMVMKLQQQSTTGDEGVEVLENRPFEDDEFGRGQYTYKVYRLQ

Protein Length: 67

Fln nts: ATGGGGATTGATCCTCTCGGCAGACAGAAAGTTCTTTCGCTTTGTTTTTCTTGTTTTCACATATAGGCAGTCTCTCGCCCGTCCTCGTCGAAGTAATTGGAAGCAGCACAGCAGCAGCC_-_ATGGTTCAAATCACAGAATTCCGAGTGGTGATGCCCCTGTCTTTGGAAGAGTATCAAATAGGACAGATGTACATGGTCATGAAGCTGCAGCAACAGAGCACGACAGGAGATGAAGGAGTTGAGGTATTAGAGAACAGACCCTTTGAAGATGATGAATTTGGGAGGGGCCAATACACATATAAGGTCTATCGTCTACAAAG

Fln Alignment:

AllPineV4_c43829___MPLSLEEYQIGQMYMVMKLQQQSTTGDEGVEVLENRPFEDDEFGRGQYTYKVYRLQ
F6GTX8_______________MPMSLEEYQIAQMYMVLKMQQQTTTSDEGVEVLENRSFQDDALGKGQYTSKVYRLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain