SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45655

Length: 405 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45655
TGGTGAAGCACAGAAAATTGACCGCATCACAGAAAAATTTGCAGAGCGCTACTGTAAGTGCAACCCAAAGGTTTTCACTAGTGCAGACACAGCTTATGTTCTTGCATACTCTGTGATCATGCTCAACACTGATGCACATAATCCAATGGTGAAGAATAAGATGTCGAAGGCAGATTTCATACGGAATAACCGAGGTATAGATGATGGAAAAGATTTACCAGAAGACTATATGGGATCCTTGTATGATCGTATTGTGAAAAATGAAATCAAGATGAAGGATGATAATTTGATGCCACAAAATAAACTTCCCACAAATGCAAACAGAATTTTAGGTCTAGATAGCATACTAAATATTGTAATTCGTAAAAGGGGGGAAGAAAAAGCTCTGGAGACGAGTGATGATCT

Ace file of the UniGene sp_v2.0_unigene45655 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SEC7-like guanine nucleotide exchange family protein [Arabidopsis thaliana] emb\|CAB82690.1\| guanine nucleotide exchange factor-like protein [Arabidopsis thaliana] gb\|AEE80118.1\| SEC7-like guanine nucleotide exchange family protein [Arabidopsis thaliana]	-	-	79%
FL-Next	sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	brefeldin a-inhibited guanine nucleotide-exchange protein 1-like	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	megagametogenesis	GO:0009561	Biological Process	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%
Blast2go	cytosol	GO:0005829	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	SEC7-like	IPR000904	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Domain of unknown function DUF1981, SEC7 associated	IPR015403	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q42510

Fln msg: Distance to subject end: 660 aas, your sequence is shorter than subject: 134 - 1451

Fln protein: GEAQKIDRITEKFAERYCKCNPKVFTSADTAYVLAYSVIMLNTDAHNPMVKNKMSKADFIRNNRGIDDGKDLPEDYMGSLYDRIVKNEIKMKDDNLMPQNKLPTNANRILGLDSILNIVIRKRGEEKALETSDD

Protein Length: 135

Fln nts: TGGTGAAGCACAGAAAATTGACCGCATCACAGAAAAATTTGCAGAGCGCTACTGTAAGTGCAACCCAAAGGTTTTCACTAGTGCAGACACAGCTTATGTTCTTGCATACTCTGTGATCATGCTCAACACTGATGCACATAATCCAATGGTGAAGAATAAGATGTCGAAGGCAGATTTCATACGGAATAACCGAGGTATAGATGATGGAAAAGATTTACCAGAAGACTATATGGGATCCTTGTATGATCGTATTGTGAAAAATGAAATCAAGATGAAGGATGATAATTTGATGCCACAAAATAAACTTCCCACAAATGCAAACAGAATTTTAGGTCTAGATAGCATACTAAATATTGTAATTCGTAAAAGGGGGGAAGAAAAAGCTCTGGAGACGAGTGATGATCT

Fln Alignment:

AllPineV4_c43793___GEAQKIDRITEKFAERYCKCNPKVFTSADTAYVLAYSVIMLNTDAHNPMVKNKMSKADFIRNNRGIDDGKDLPEDYMGSLYDRIVKNEIK
Q42510_______________GESQKIQRVLEAFSERYYMQSPEILANKDAALVLSYSIIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELFHSICNNEIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain