SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45633

Length: 2196 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45633
TATGGGGAGCATTGTGAAGCAAATCAAAATCCAAATAGCAGATCATGGAAGCATACTCGTCTACCCCGCTGTTCACTGTTGATCATGAGATTGCAAATTTCGTTGTTTCCTGTGGATTACTGTCCAAGGCTTGGGAAGAGACACATCTTGCAAACAGCTTAGAGAGTTACAGTTTGAATGAGTATGAAGGCGTTGCATATGTTGCCTTCCCGTCATTTCATAACATAGAAGGTTTTGCTGTCAAAGATAGTAAATATGGAGAGGGCAACATACGAACTGATAACAAGGTCTTCTCTGCTGCCCTCAAGAGTAATGATGAGCAACCAGCCCTTGTCCATCAGGGAGCTCTTAAGCTGTTCCTACATATTATGGAGAATACTGATTTCCAAGCAAAGATACAGATTTATACTGACTCAAAACAAAGGCAACTCAAACCCATTATATTTGTGGGTCATTCCTTAGGAGGGGCAGTTGCAACTTTGGCCACACTATGGGTACTGGAAAAGAGGCTCAGGCAAAGTTCCCCTTTGTGTATAACATTTGGATGTCCACTAGTGGGGGATGCAGGACTTGTTGAAGCTGTTGGTCGTGAAAATTGGGCAGGCAATTTTTGTCATGTGGTTTCCAAGCATGATATTGTTCCTCGAATGTTCCTTGCACCATTTGACTCAATCGCTGAACACTTGATTGCTATCTTGCCTTACTGGCAAGACATAATGGTTCATGGCAGTAAAGCTGTACTTCATTCTTCTATTCAAGATGCTTGTAAGACTCTGCTCAATAATGTTCTCCAGTATACTCACAAAGTAACAGACTATGGGCCTGAGTCTCTGAGGGAATTAGGAGTTATCAAAAGAAGCCCATATAGACCTTTTGGCACTTATATGTTTTGTTCAGGCGAGGGTGCAGCTTGTATTGATAATTCTGAGACCGTTTTGAAGATTCTTCATTTGACAATGCAGAGCTACGGAAAACCTTACGATAATATCGTACAGGACTGTTTTTCAGAGCATGTAGAGTATGGTTCTGTTTTGAATCATGTCATAGAAAAGTCCATAAGTGGGAGAAGAAGTGCAAAACCTGATTCAGAATCTTCTGACAAGATGGGACTGTCATTGCAGCTGGAAGCCATTGGTATTGGTGTTGGTGATCAGAATGATGATGCACCAGTTGCCCTACAAATGGCCAGGGATATTGAAAACAAGCATAACACAAACATTGCTAAGCTAGCAATTGAATTAAGTGAGAAACAATGTATTATGGTGGAGCTTGAGTGGTCTAAAGAGCGTTGTGAGAAGGAAAATGCCTTAACATATTATGATTCCTTCCGGAAACATGAGGATATCGATACTAATTTGGGAAGGGAAAGGCTGGACGGGTTTTGGGATGAGATTATTGAAATGTGGAAGAAACATGAGTTGCCCAGTGATTTCCAATCTCAAAATAAGTGGATAAACGCTGGCACTGCTTATAGAAGATTTGTGGAGCCTCTGGATATTGCACATTATTATCGCGTGTCGGAGGGTAAAGGCAACTATCTTTCGGATGGAAGGCCCACTCGTCATAAAGTTCTTGAAAAATGGATGGAAGAGAAAGAAAAAACTCGGAGTTCAAAAGGTCGGAGCAGCCGCACAAAGTTTGCATCTCTCACTCAAGACTCGTGCTTTTGGGCACAAGTAGAAGAGGCTTTGAAAGAAATGAAAAATCTGGAACAGGGGCAGCAGCAACAGTTGGGAAGTCTTGAAATGTTCGAAGGTTATGCGACAAAAATGATCAATGATCGCAACATTTCCTCAGATATTTTCTTGGAAGGGAGCAGCTTCATGGAGTGGTGGAAAGAGTGGAAAGAATACAAGAACAATCGATTCCCGGAGTGGAGATCTCCTCTGCATGAAATAATGGAAACGGAAGGTTGTAAAGGTTAAATTTGCATATTAGTGGAACTTTGTTCCAATTAGGTTTCCTGTTTTTGAGATGTAATTTCCTTTCATAGGTTTAAAATAGTGTGATTGCTGTAATGTAATATACTAATGGTTAATGAACGAACGTATCTTACTTTTATTGCAAGATGAGGAATTTATTGACGTAATTAAGACCCAGAATGACTGAGAGAATTGGATTAACAAATGCATTTTGCCTAAATTTTCAATGTGGGATATATTTTGAGACTATCATGAACCAGAATGGTACAGAGAG

Ace file of the UniGene sp_v2.0_unigene45633 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipase_3 domain containing protein	-	-	6.0e-19	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	uncharacterized protein loc100788725	-	-	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLY7

Fln msg:

Fln protein: MEAYSSTPLFTVDHEIANFVVSCGLLSKAWEETHLANSLESYSLNEYEGVAYVAFPSFHNIEGFAVKDSKYGEGNIRTDNKVFSAALKSNDEQPALVHQGALKLFLHIMENTDFQAKIQIYTDSKQRQLKPIIFVGHSLGGAVATLATLWVLEKRLRQSSPLCITFGCPLVGDAGLVEAVGRENWAGNFCHVVSKHDIVPRMFLAPFDSIAEHLIAILPYWQDIMVHGSKAVLHSSIQDACKTLLNNVLQYTHKVTDYGPESLRELGVIKRSPYRPFGTYMFCSGEGAACIDNSETVLKILHLTMQSYGKPYDNIVQDCFSEHVEYGSVLNHVIEKSISGRRSAKPDSESSDKMGLSLQLEAIGIGVGDQNDDAPVALQMARDIENKHNTNIAKLAIELSEKQCIMVELEWSKERCEKENALTYYDSFRKHEDIDTNLGRERLDGFWDEIIEMWKKHELPSDFQSQNKWINAGTAYRRFVEPLDIAHYYRVSEGKGNYLSDGRPTRHKVLEKWMEEKEKTRSSKGRSSRTKFASLTQDSCFWAQVEEALKEMKNLEQGQQQQLGSLEMFEGYATKMINDRNISSDIFLEGSSFMEWWKEWKEYKNNRFPEWRSPLHEIMETEGCKG*

Protein Length: 628

Fln nts: TATGGGGAGCATTGTGAAGCAAATCAAAATCCAAATAGCAGATC_-_ATGGAAGCATACTCGTCTACCCCGCTGTTCACTGTTGATCATGAGATTGCAAATTTCGTTGTTTCCTGTGGATTACTGTCCAAGGCTTGGGAAGAGACACATCTTGCAAACAGCTTAGAGAGTTACAGTTTGAATGAGTATGAAGGCGTTGCATATGTTGCCTTCCCGTCATTTCATAACATAGAAGGTTTTGCTGTCAAAGATAGTAAATATGGAGAGGGCAACATACGAACTGATAACAAGGTCTTCTCTGCTGCCCTCAAGAGTAATGATGAGCAACCAGCCCTTGTCCATCAGGGAGCTCTTAAGCTGTTCCTACATATTATGGAGAATACTGATTTCCAAGCAAAGATACAGATTTATACTGACTCAAAACAAAGGCAACTCAAACCCATTATATTTGTGGGTCATTCCTTAGGAGGGGCAGTTGCAACTTTGGCCACACTATGGGTACTGGAAAAGAGGCTCAGGCAAAGTTCCCCTTTGTGTATAACATTTGGATGTCCACTAGTGGGGGATGCAGGACTTGTTGAAGCTGTTGGTCGTGAAAATTGGGCAGGCAATTTTTGTCATGTGGTTTCCAAGCATGATATTGTTCCTCGAATGTTCCTTGCACCATTTGACTCAATCGCTGAACACTTGATTGCTATCTTGCCTTACTGGCAAGACATAATGGTTCATGGCAGTAAAGCTGTACTTCATTCTTCTATTCAAGATGCTTGTAAGACTCTGCTCAATAATGTTCTCCAGTATACTCACAAAGTAACAGACTATGGGCCTGAGTCTCTGAGGGAATTAGGAGTTATCAAAAGAAGCCCATATAGACCTTTTGGCACTTATATGTTTTGTTCAGGCGAGGGTGCAGCTTGTATTGATAATTCTGAGACCGTTTTGAAGATTCTTCATTTGACAATGCAGAGCTACGGAAAACCTTACGATAATATCGTACAGGACTGTTTTTCAGAGCATGTAGAGTATGGTTCTGTTTTGAATCATGTCATAGAAAAGTCCATAAGTGGGAGAAGAAGTGCAAAACCTGATTCAGAATCTTCTGACAAGATGGGACTGTCATTGCAGCTGGAAGCCATTGGTATTGGTGTTGGTGATCAGAATGATGATGCACCAGTTGCCCTACAAATGGCCAGGGATATTGAAAACAAGCATAACACAAACATTGCTAAGCTAGCAATTGAATTAAGTGAGAAACAATGTATTATGGTGGAGCTTGAGTGGTCTAAAGAGCGTTGTGAGAAGGAAAATGCCTTAACATATTATGATTCCTTCCGGAAACATGAGGATATCGATACTAATTTGGGAAGGGAAAGGCTGGACGGGTTTTGGGATGAGATTATTGAAATGTGGAAGAAACATGAGTTGCCCAGTGATTTCCAATCTCAAAATAAGTGGATAAACGCTGGCACTGCTTATAGAAGATTTGTGGAGCCTCTGGATATTGCACATTATTATCGCGTGTCGGAGGGTAAAGGCAACTATCTTTCGGATGGAAGGCCCACTCGTCATAAAGTTCTTGAAAAATGGATGGAAGAGAAAGAAAAAACTCGGAGTTCAAAAGGTCGGAGCAGCCGCACAAAGTTTGCATCTCTCACTCAAGACTCGTGCTTTTGGGCACAAGTAGAAGAGGCTTTGAAAGAAATGAAAAATCTGGAACAGGGGCAGCAGCAACAGTTGGGAAGTCTTGAAATGTTCGAAGGTTATGCGACAAAAATGATCAATGATCGCAACATTTCCTCAGATATTTTCTTGGAAGGGAGCAGCTTCATGGAGTGGTGGAAAGAGTGGAAAGAATACAAGAACAATCGATTCCCGGAGTGGAGATCTCCTCTGCATGAAATAATGGAAACGGAAGGTTGTAAAGGTTAA___ATTTGCATATTAGTGGAACTTTGTTCCAATTAGGTTTCCTGTTTTTGAGATGTAATTTCCTTTCATAGGTTTAAAATAGTGTGATTGCTGTAATGTAATATACTAATGGTTAATGAACGAACGTATCTTACTTTTATTGCAAGATGAGGAATTTATTGACGTAATTAAGACCCAGAATGACTGAGAGAATTGGATTAACAAATGCATTTTGCCTAAATTTTCAATGTGGGATATATTTTGAGACTATCATGAACCAGAATGGTACAGAGAG

Fln Alignment:

AllPineV4_c43765___MEAYSSTPLFTVDHEIANFVVSCGLLSKAWEETHLANSLESYSLNEYEGVAYVAFPSFHNIEGFAVKDSKYGEGNIRTDNKVFSAALKSNDEQPALVHQGALKLFLHIMENTDFQAKIQIYTDSKQRQLKPIIFVGHSLGGAVATLATLWVLEKRLRQSSPLCITFGCPLVGDAGLVEAVGRENWAGNFCHVVSKHDIVPRMFLAPFDSIAEHLIAILPYWQDIMVHGSKAVLHSSIQDACKTLLNNVLQYTHKVTDYGPESLREL-GVIKRSPYRPFGTYMFCSGEGAACIDNSETVLKILHLTMQSYGKPYDNIVQDCFSEHVEYGSVLNHVIEKSISGRRSAKPDSESSDKMGLSLQLEAIGIGVGDQNDDAPVALQMARDIENKHNTNIAKLAIELSEKQCIMVELEWSKERCEKENALTYYDSFRKHEDIDTNLGRERLDGFWDEIIEMWKKHELPSDFQSQNKWINAGTAYRRFVEPLDIAHYYRVSEGKGNYLSDGRPTRHKVLEKWMXXXXXXXXXXXXXXXXKFASLTQDSCFWAQVEEALKEMKNXXXXXXXXXXXXEMFEGYATKMINDRNISSDIFLEGSSFMEWWKEWKEYKNNRFPEWRSPLHEIMETEGCKG
B8LLY7_______________MEAQSSTPIFTVDQDIATFLVSCGILPKAWEESRLASNSEGFSLNEYEGVAYVAFPSFHNIEGFVVQESKYGEGKIQTDNKVFSGCLKGNDDQPALVHQGALKLFLRIMENTDFQAKMQIYTDSKQRKLKPIIFVGHSLGGAVATLATLWVLEKRLRQSSPFCITFGSPLVGDVGLVEAVGCENWAGNFCHVVSTHDIVPRMLLAPIESIAEPLIAILPYWQDIMANDSKIVPDSFIQDACRTLLNNV--------NYGLDSVKELDGVIKKSPYRPFGTYMFCSGEGAACIDNSETVMKILHLTMQRHEKPYANIVQGCFSEHIEYGSVLNHVIEKSISGRRTEKPDSESSYEMGMSLQLEAIGVGA--QNDDAPIALQIARDVENKHNTNVAKLTIELSEKQCIMAELEWYKERCEKEVGITYYDSFRKHKDVDANLCRVRLAEFWDKIIEMWERHELPSDFQSQNKWINAGTAYRRLVEPLDIAHYYRMCKGKGNYLSDGRPTRHKVLQKWMEEKENTRGSRGQKGRTKLASLTQDSCFWAHLEEALKELESLKQDQHQKLESLEMFEGYVTRKINDRSVSSDVFLEGSSFMEWWKEWKEYKQNQFPEWSSTLYEIMEGESWKG

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
335		12		87	0.992554
722	80		10		0.959698
727			11	88	0.991528
728	11			88	0.991528
729		88	11		0.991528
731	88		11		0.991528
732	11			88	0.991528
733	88	11			0.991528
737	88	11			0.991528
738	11		88		0.991528
739	11			88	0.991528
741		88		11	0.991528
833			83	16	0.994512
865		12		87	0.992554
929	72	9	18		0.999994
1088	11		88		0.923564
1139		10		80	0.959698
1140		10		90	0.90298
1394		16		83	0.994512
1668	80	20			0.995493
1858		16		83	0.994512
1934		16		83	0.994512
1962		16		83	0.994512
2067		14	85		0.993533
2180	16		83		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain