SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45512

Length: 311 nt

UniGene Fasta

>sp_v2.0_unigene45512
CACAGTGCCCAAGCCTGCAAGCGGAGAATGGCCGGCTTCCCCCATTGCCTCCACTCGCACCACCGCCTCCGCAAGCTGAAATCCGAGCGAGACCTGCGCGAAGGATAAGGGAATGGCAGACTTTCCAAGAAACGGACCTCTCGAACGCGACATTGAGCAGGCAATAACTGCGCTGAAGAAAGGGGCGTATTTGCTCAAGTACGGGCGGAGAGGGAAGCCTAAATTCTGCCCTTTCAGGCTTTCTAACGATGAATCTGTGTTGCTATGGTATTCTGGTAAGAAGGAAAACATCTAAAGCTGAATCAATGTAT

Ace file of the UniGene sp_v2.0_unigene45512

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ran GTPase binding protein, putative n=3 Tax=rosids RepID=B9SM24_RICCO	-	-	2.0e-22	85%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	81%
Blast2go	ran gtpase binding	-	-	1.60208e-26	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	1.60208e-26	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.60208e-26	92%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Brevis radix-like domain	IPR013591	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9HNF1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1031 aas, your sequence is shorter than subject: 61 - 1104

Fln protein: MADFPRNGPLERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLLWYSGKKENI*

Protein Length: 62

Fln nts: CACAGTGCCCAAGCCTGCAAGCGGAGAATGGCCGGCTTCCCCCATTGCCTCCACTCGCACCACCGCCTCCGCAAGCTGAAATCCGAGCGAGACCTGCGCGAAGGATAAGGGA_-_ATGGCAGACTTTCCAAGAAACGGACCTCTCGAACGCGACATTGAGCAGGCAATAACTGCGCTGAAGAAAGGGGCGTATTTGCTCAAGTACGGGCGGAGAGGGAAGCCTAAATTCTGCCCTTTCAGGCTTTCTAACGATGAATCTGTGTTGCTATGGTATTCTGGTAAGAAGGAAAACATCTAAAGCTGAATCAATGTAT

Fln Alignment:

AllPineV4_c43623___DKGMADFPRNGPLERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLLWYSGKKE
B9HNF1_______________DRMASDLGRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain