SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45493

Length: 464 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45493
TTTGCATGTCTCACCTATGCAATTAAATTCAAACCTCAATAAGCCTATTCATTGCTTTTGTGGTCTTCCAAAGAACAAGGGTATGGAAAAGTGTAAAAAAGATGGCCCATGTGTAGGAACAAAAGGCTACCGTGCTCCGGAGGTGTTATTGAGGTCATTACATCAGACCTCCAAACTTGATATCTGGTCAGCTGGATTGAGTTTGCTGCATTTTCTAGTTGGGAAGTCACCTTTTCCTCCCAACAGCCATGATCAAGCCATAAAAGATATTGCAAAAATGCGTGGTGCTGAAGAAATATGTGAGCTATCTAAACTTCATGATCGGCAGTGCTCTCTGCCTCAGGATCTGCACTCAAATGAGTTTGAACATACGACAATGCAAGAGTGGTGTATTAAAAACACCAAAAGACCAGAGTTTCTTGATAGTGTTCCATTGTCGCTCTATGATCTTCTTGATAAATGCT

Ace file of the UniGene sp_v2.0_unigene45493 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cell cycle protein kinase [Oryza sativa Japonica Group]	-	-	1.0e-36	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	protein	-	-	0.0	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	0.0	72%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ04

Fln msg: Distance to subject end: 53 aas, your sequence is shorter than subject: 154 - 277

Fln protein: LHVSPMQLNSNLNKPIHCFCGLPKNKGMEKCKKDGPCVGTKGYRAPEVLLRSLHQTSKLDIWSAGLSLLHFLVGKSPFPPNSHDQAIKDIAKMRGAEEICELSKLHDRQCSLPQDLHSNEFEHTTMQEWCIKNTKRPEFLDSVPLSLYDLLDKC

Protein Length: 155

Fln nts: TTTGCATGTCTCACCTATGCAATTAAATTCAAACCTCAATAAGCCTATTCATTGCTTTTGTGGTCTTCCAAAGAACAAGGGTATGGAAAAGTGTAAAAAAGATGGCCCATGTGTAGGAACAAAAGGCTACCGTGCTCCGGAGGTGTTATTGAGGTCATTACATCAGACCTCCAAACTTGATATCTGGTCAGCTGGATTGAGTTTGCTGCATTTTCTAGTTGGGAAGTCACCTTTTCCTCCCAACAGCCATGATCAAGCCATAAAAGATATTGCAAAAATGCGTGGTGCTGAAGAAATATGTGAGCTATCTAAACTTCATGATCGGCAGTGCTCTCTGCCTCAGGATCTGCACTCAAATGAGTTTGAACATACGACAATGCAAGAGTGGTGTATTAAAAACACCAAAAGACCAGAGTTTCTTGATAGTGTTCCATTGTCGCTCTATGATCTTCTTGATAAATGCT

Fln Alignment:

AllPineV4_c43597___VGTKGYRAPEVLLRSLHQTSKLDIWSAGLSLLHFLVGKSPFPPNSHDQAIKDIAKMRGAEEICELSKLHDRQCSL
B8LQ04_______________VVTRWYRAPELLLNSPDYTAAIDVWSVGCIFMELMNRKPLFPGKDHVHQLRLITELTGTPTDADLGFLRSENAKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain