SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45484

Length: 332 nt

UniGene Fasta

>sp_v2.0_unigene45484
ATGGGGAGGCTCGAGACTTCATTAACAAAATGCCCATGGAACCCGATGCTACTGTGTGGGGATGTTTGCTTGGCGCATGTAGACTTCACAATAATATAGAGCTTGGAAAATGGGCAGCAGAGCAGCTTTTCAAGCTGGACCCTGATAATGCCACAGCCTATGTGGTGCTGTCAAACAGCTATGCTGCAGCTGGTCTGTGGGAGGACACTGAAAATGTCCGGCGAATGATGAAAGACAAGATGATTAAAAAGATGCCTGGACGCAGTTGGATTGAGGTGAATAAACAGGTGCATTCTTTCTATGCAAACGATAGATCACACCCACAATCACAT

Ace file of the UniGene sp_v2.0_unigene45484

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	pentatricopeptide repeat-containing protein mitochondrial-like	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 109 aas, your sequence is shorter than subject: 110 - 246

Fln protein: GEARDFINKMPMEPDATVWGCLLGACRLHNNIELGKWAAEQLFKLDPDNATAYVVLSNSYAAAGLWEDTENVRRMMKDKMIKKMPGRSWIEVNKQVHSFYANDRSHPQSH

Protein Length: 111

Fln nts: ATGGGGAGGCTCGAGACTTCATTAACAAAATGCCCATGGAACCCGATGCTACTGTGTGGGGATGTTTGCTTGGCGCATGTAGACTTCACAATAATATAGAGCTTGGAAAATGGGCAGCAGAGCAGCTTTTCAAGCTGGACCCTGATAATGCCACAGCCTATGTGGTGCTGTCAAACAGCTATGCTGCAGCTGGTCTGTGGGAGGACACTGAAAATGTCCGGCGAATGATGAAAGACAAGATGATTAAAAAGATGCCTGGACGCAGTTGGATTGAGGTGAATAAACAGGTGCATTCTTTCTATGCAAACGATAGATCACACCCACAATCACAT

Fln Alignment:

AllPineV4_c43586___EARDFINKMPMEPDATVWGCLLGACRLHNNIELGKWAAEQLFKLDPDNATAYVVLSNSYAAAGLWEDTENVRRXXXXXXXXXXPGRSWIEVNKQVHSFYANDRSHPQS
D5AAE0_______________EARDFMKTIPFAPDANVWGALLGACRMYGNIDLGKHAAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
118		66		33	0.997454
121	66			33	0.997452
122		33	66		0.997452
123		66		33	0.997452
244	33			66	0.997454
246	33			33	0.997728

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain