SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45398

Length: 429 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45398
GAAAGTGGAGAAGATGGGTGAGGCCTTGAGGCAATCCTACTCGGTGGCTCTTATTCTTTTCGTTTGGGCATGCTGGTGTTGCATGATTAGTGGTGTTGTTGGTCAGAACAGTCCAAAGATAGTTTACATGGTCATTCTCAGAGACTCGGCTTTCGTGCATCATAACAGTGTAAGCCCCATGGCCACTACTCACCATGCTCACAGCCACCATTCGAAGCCTGGAAAATTGCATAAGATGCAAACACTAAGGCAAATGAAGAATGCAACGAGGGATCCGTACACTTCCTACCTCATTAGGGTTCAGGACTCACTTTTGAAGCGCACTTTTGAGAGAGGAACTTACAAGAAACTCTACAGCTATCATTACTTGATCAATGGATTTGCTGTTCTGATTAATCCTCAGCAGGCAGAAAAACTGGACAACCAGAC

Ace file of the UniGene sp_v2.0_unigene45398 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam05922, Inhibitor_I9, Peptidase inhibitor I9	-	-	1.0e-05	34%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	55%
Blast2go	subtilisin-like protease-like	-	-	8.9084e-14	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	8.9084e-14	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7U8E2

Fln msg: Distance to subject end: 710 aas, your sequence is shorter than subject: 138 - 842

Fln protein: MGEALRQSYSVALILFVWACWCCMISGVVGQNSPKIVYMVILRDSAFVHHNSVSPMATTHHAHSHHSKPGKLHKMQTLRQMKNATRDPYTSYLIRVQDSLLKRTFERGTYKKLYSYHYLINGFAVLINPQQAEKLDNQ

Protein Length: 139

Fln nts: GAAAGTGGAGAAG_-_ATGGGTGAGGCCTTGAGGCAATCCTACTCGGTGGCTCTTATTCTTTTCGTTTGGGCATGCTGGTGTTGCATGATTAGTGGTGTTGTTGGTCAGAACAGTCCAAAGATAGTTTACATGGTCATTCTCAGAGACTCGGCTTTCGTGCATCATAACAGTGTAAGCCCCATGGCCACTACTCACCATGCTCACAGCCACCATTCGAAGCCTGGAAAATTGCATAAGATGCAAACACTAAGGCAAATGAAGAATGCAACGAGGGATCCGTACACTTCCTACCTCATTAGGGTTCAGGACTCACTTTTGAAGCGCACTTTTGAGAGAGGAACTTACAAGAAACTCTACAGCTATCATTACTTGATCAATGGATTTGCTGTTCTGATTAATCCTCAGCAGGCAGAAAAACTGGACAACCAGAC

Fln Alignment:

AllPineV4_c43480___PGKLHKMQTLRQMKNATRDPYTSYLIRVQDSLLKRTFERGTYKKLYSYHYLINGFAVLINPQQAEKL
D7U8E2_______________PGKLDRLHTPRRNISRSDPHYNSYISRVHDSLLRRALRGEQYLKLYSYHYLINGFAVFVTSQQAEKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain