SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45281

Length: 212 nt

UniGene Fasta

>sp_v2.0_unigene45281
GGAAGACCCTCGAGTATGAGTTCTTCTCATAGTACAGATTGGAATGTGATAGATGATAAACTTCCACCACTTGCCAGTTTCAGAGCAGAAATGAAAAAATGCTGTTCGATGTTGCAGATTGCCCTTGAATCCTATTTTGAGCTGAATGATGAACATAGTACTCACATTTGGAGGAGATTGCAGAGATTAAAGAATATTTGCTAGATTCTGGC

Ace file of the UniGene sp_v2.0_unigene45281

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Poly(P)/ATP NAD kinase, putative n=1 Tax=Ricinus communis RepID=B9S2U3_RICCO	-	-	3.0e-15	52%
FL-Next	sp=NAD kinase 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Blast2go	nad kinase chloroplastic-like	-	-	2.53858e-18	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	NAD(+) kinase.	EC:2.7.1.23	-	2.53858e-18	70%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nicotinate and nicotinamide metabolism	00760		2.53858e-18	70%
Blast2go	Metabolic pathways	01100		2.53858e-18	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	NAD+ kinase activity	GO:0003951	Molecular Function	2.53858e-18	70%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	2.53858e-18	70%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.53858e-18	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C5W3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 747 aas, your sequence is shorter than subject: 68 - 985

Fln protein: GRPSSMSSSHSTDWNVIDDKLPPLASFRAEMKKCCSMLQIALESYFELNDEHSTHIWRRLQRLKNIC*

Protein Length: 69

Fln nts: GGAAGACCCTCGAGTATGAGTTCTTCTCATAGTACAGATTGGAATGTGATAGATGATAAACTTCCACCACTTGCCAGTTTCAGAGCAGAAATGAAAAAATGCTGTTCGATGTTGCAGATTGCCCTTGAATCCTATTTTGAGCTGAATGATGAACATAGTACTCACATTTGGAGGAGATTGCAGAGATTAAAGAATATTTGCTAGATTCTGGC

Fln Alignment:

AllPineV4_c43342___GRPSSMSSSHSTDWNVIDDKLPPLASFRAEMKKCCSMLQIALESYFELNDEHSTHIWRRLQRLKNIC
Q9C5W3_______________GRSSSMNSFNLDDVGVAEESLPPLAVFRGEMKRCCESLHIALENYLTPDDERSGIVWRKLQKLKNVC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain