SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45151

Length: 204 nt

UniGene Fasta

>sp_v2.0_unigene45151
AGTTTCAGAATAGAGATATGGGGTTATTCGGCATTTACAGTTCTGCCCCTAATTCAGGCCACGTTAATGTGTCGCGTTACCTGCAGAGGAACCTTTTCTCTAATATTTTGAAACAGGTGGGGTTTTGGCCGAATCCGGAGAAAGCAATCGTGGAGGCCTTTCGAGAGACGAAGGCCGGGATTTTGAAGGACGAGAAGGTGGCTT

Ace file of the UniGene sp_v2.0_unigene45151

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein phosphatase type 2C [Lotus japonicus]	-	-	2.0e-06	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	protein phosphatase 2c 9	-	-	1.13045e-08	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoprotein phosphatase.	EC:3.1.3.16	-	1.13045e-08	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	red light signaling pathway	GO:0010161	Biological Process	1.13045e-08	64%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	1.13045e-08	64%
Blast2go	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	1.13045e-08	64%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.13045e-08	64%
Blast2go	nucleus	GO:0005634	Cellular Component	1.13045e-08	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV16

Fln msg: Distance to subject end: 162 aas, your sequence is shorter than subject: 67 - 298

Fln protein: FQNRDMGLFGIYSSAPNSGHVNVSRYLQRNLFSNILKQVGFWPNPEKAIVEAFRETKAGILKDEKVA

Protein Length: 68

Fln nts: AGTTTCAGAATAGAGATATGGGGTTATTCGGCATTTACAGTTCTGCCCCTAATTCAGGCCACGTTAATGTGTCGCGTTACCTGCAGAGGAACCTTTTCTCTAATATTTTGAAACAGGTGGGGTTTTGGCCGAATCCGGAGAAAGCAATCGTGGAGGCCTTTCGAGAGACGAAGGCCGGGATTTTGAAGGACGAGAAGGTGGCTT

Fln Alignment:

AllPineV4_c43182___QNRDMGLFGIYSSAPNSGHV--NVSRYLQRNLFSNILKQVGFWPNPEKAIVEAFRETKAGILKD
A9NV16_______________KGHELGLFAIFD-----GHLGDNVPSYLQKNLFQNILNEEEFWFHPRRAITKAYEKTDKAILRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain