SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45132

Length: 290 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45132
AATACCCATCTGTCAATTTCTGGACTACAGTGGTGACCCATATGGTTAAAACATATAATGGGGCCTGTTTAGCTTCAGAGATAGTGATTGAGATGTGTTATTTCTTCAAAGATGGAAGGGTGGATCCGAGGAAGAGGAGCAATCAGCCATTGCTTTCAATGAAGCCAAATACTGAGGCTTTCAACATTGCCACAATGGTTCGTTGGCTTTTGGGATGACTAGAAAGGCAGAGGAACTCTTAGAGCTGATGACTAGAGTGGGGGTGAAGGCTGATGCTACTTCAATTGCTC

Ace file of the UniGene sp_v2.0_unigene45132 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SA60.1\|PPR6_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03100, mitochondrial; Flags: Precursor gb\|AAD25799.1\|AC006550_7 Contains PF\|00637 Clathrin 7-fold repea	-	-	3.0e-18	50%
FL-Next	sp=Pentatricopeptide repeat-containing protein At1g03100, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	pentatricopeptide repeat-containing protein mitochondrial-like	-	-	3.39228e-21	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SA60

Fln msg: Separated hits, possible frame ERROR between 191 and 197, Distance to subject end: 496 aas, your sequence is shorter than subject: 96 - 793

Fln protein: YPSVNFWTTVVTHMVKTYNGACLASEIVIEMCYFFKDGRVDPRKRSNQPLLSMKPNTEAFNIxxxGSLAFGMTRKAEELLELMTRVGVKADATSIA

Protein Length: 97

Fln nts: AATACCCATCTGTCAATTTCTGGACTACAGTGGTGACCCATATGGTTAAAACATATAATGGGGCCTGTTTAGCTTCAGAGATAGTGATTGAGATGTGTTATTTCTTCAAAGATGGAAGGGTGGATCCGAGGAAGAGGAGCAATCAGCCATTGCTTTCAATGAAGCCAAATACTGAGGCTTTCAACATTGCxxxxxxTGGTTCGTTGGCTTTTGGGATGACTAGAAAGGCAGAGGAACTCTTAGAGCTGATGACTAGAGTGGGGGTGAAGGCTGATGCTACTTCAATTGCTC

Fln Alignment:

AllPineV4_c43161___YPSVNFWTTVVTHMVKTYNGACLASEIVIEMCYFFKDGRVDPRKRSNQPLLSMKPNTEAFNIAxxGSLAFGMTRKAEELLELMTRVGVKADA
Q9SA60_______________YPHVSAWSAVLAHMSLAGSGSYLSAELVLEIGYLFHNNRVDPRKKSNAPLLAMKPNTQVLNVAxxGCLLFGTTRKAEQLLDMIPKIGVKADA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain