SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45095

Length: 529 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene45095
GCCATGGAGTCTGCAATATTAAAACAATTGAAGTTCAAGCTTACAATTCCCACTCCATATGTATTCCTCCTCAGGTTTCTGAAGGCAGCTGGTCCCGACAAAGTGATGGAAAATCTGGCATTCTTCTTGGTTGAACTGTGTTTGCTTCAGTACATAATGATTAAATACAGTCCATCATTGATTGCTGCTGCTGCTGTCTATACTGCTCGATGCACTTTGAGGAAGGATCCATCTTGGAATAAAACACTTACCCTTCATACAGGCTACTCTGAGTCGGACCTCGAGGAATGTGCGCATTTCATGGTTGACTTTCACCTAAATGCGGGAGTAAATAAGCTGAGAGCTGTTCATGAGAAGTATTCAGATCCAGTTTTTGGCTATGTTGCTTTTTTAATTCCTGCCAAATTACCTGTAAAGGACAGTTGCAACGCTAACAACTGATCAACATGCATGCCAAGTTACCTGTTGAAGACAGTTGCAGCGCCAACAACTGTTCAACATGCATACCAAAATTACTTCAGGCCCCTAA

Ace file of the UniGene sp_v2.0_unigene45095

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable G2/mitotic-specific cyclin (Fragment) n=1 Tax=Picea mariana RepID=O65064_PICMA	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	mitotic cyclin	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC16

Fln msg: your sequence is shorter than subject: 147 - 465

Fln protein: AMESAILKQLKFKLTIPTPYVFLLRFLKAAGPDKVMENLAFFLVELCLLQYIMIKYSPSLIAAAAVYTARCTLRKDPSWNKTLTLHTGYSESDLEECAHFMVDFHLNAGVNKLRAVHEKYSDPVFGYVAFLIPAKLPVKDSCNANN*

Protein Length: 148

Fln nts: GCCATGGAGTCTGCAATATTAAAACAATTGAAGTTCAAGCTTACAATTCCCACTCCATATGTATTCCTCCTCAGGTTTCTGAAGGCAGCTGGTCCCGACAAAGTGATGGAAAATCTGGCATTCTTCTTGGTTGAACTGTGTTTGCTTCAGTACATAATGATTAAATACAGTCCATCATTGATTGCTGCTGCTGCTGTCTATACTGCTCGATGCACTTTGAGGAAGGATCCATCTTGGAATAAAACACTTACCCTTCATACAGGCTACTCTGAGTCGGACCTCGAGGAATGTGCGCATTTCATGGTTGACTTTCACCTAAATGCGGGAGTAAATAAGCTGAGAGCTGTTCATGAGAAGTATTCAGATCCAGTTTTTGGCTATGTTGCTTTTTTAATTCCTGCCAAATTACCTGTAAAGGACAGTTGCAACGCTAACAACTGA___TCAACATGCATGCCAAGTTACCTGTTGAAGACAGTTGCAGCGCCAACAACTGTTCAACATGCATACCAAAATTACTTCAGGCCCCTAA

Fln Alignment:

AllPineV4_c43121___MESAILKQLKFKLTIPTPYVFLLRFLKAAGPDKVMENLAFFLVELCLLQYIMIKYSPSLIAAAAVYTARCTLRKDPSWNKTLTLHTGYSESDLEECAHFMVDFHLNAGVNKLRAVHEKYSDPVFGYVAFLIPAKLP
D5AC16_______________MEKEMLNKLKFHLTVPTPYVFLVRFLKAAGSDEEMANLVFFLTELSLMQYVMIKFPPSMLAAAAVYTARCTLQKMPVWSHVLKAHSGYSETDLKECVKLMVAFHQSSEESKLNTVIKKYSTPEYNSVAFIKPAKLP

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
399		40		60	1.0
400	40			60	1.0
421	50		50		1.0
434	25	75			0.996473
435		33	66		0.997453
437		33		66	0.997453
443		66		33	0.997454

SSRs (tot: 1)

Start position	End position	Sequence	Length
183	196	TGC TGC TGC TGC TG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain