SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45061

Length: 384 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45061
ATACAAACAATAAAAGAAATTATTGCAGGGACACATTCAGACGAAGAAATACATGCAACCCTCAAAGAATCCAACATGGATCCCAATGAGACCGCCCAGAAGCTACTAACTCAAGATCCCTTTCACGAGGTTAAGAGGAAGACAGAGAAGAAAAAAGAGAATGCAAGCAATAGAGATTATGGAGATACACAATTGAAAGCTAGCAGTCAAGGACAAGGCGGAAAAGCAGGTGTATTGTTAGAACGAGGAGCTGGTCGTGGAAGCTACTTGCAACATCATAATTCATATGATGTTGGTGCTGGTAGGGGCTCAATTATAACAAGGGATAGTAAAGTCTATCAGAACACTAACATATGCTCCAATTCTGCATTGCCTCCATCCATG

Ace file of the UniGene sp_v2.0_unigene45061 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1296 domain containing protein	-	-	9.0e-22	71%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	47%
Blast2go	uncharacterized protein	-	-	5.71475e-26	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Apoptosis inhibitory 5	IPR008383	-	0.0	-
Sma3	Protein of unknown function DUF1296	IPR009719	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TD97

Fln msg: Distance to subject end: 760 aas, your sequence is shorter than subject: 128 - 896

Fln protein: IQTIKEIIAGTHSDEEIHATLKESNMDPNETAQKLLTQDPFHEVKRKTEKKKENASNRDYGDTQLKASSQGQGGKAGVLLERGAGRGSYLQHHNSYDVGAGRGSIITRDSKVYQNTNICSNSALPPSM

Protein Length: 129

Fln nts: ATACAAACAATAAAAGAAATTATTGCAGGGACACATTCAGACGAAGAAATACATGCAACCCTCAAAGAATCCAACATGGATCCCAATGAGACCGCCCAGAAGCTACTAACTCAAGATCCCTTTCACGAGGTTAAGAGGAAGACAGAGAAGAAAAAAGAGAATGCAAGCAATAGAGATTATGGAGATACACAATTGAAAGCTAGCAGTCAAGGACAAGGCGGAAAAGCAGGTGTATTGTTAGAACGAGGAGCTGGTCGTGGAAGCTACTTGCAACATCATAATTCATATGATGTTGGTGCTGGTAGGGGCTCAATTATAACAAGGGATAGTAAAGTCTATCAGAACACTAACATATGCTCCAATTCTGCATTGCCTCCATCCATG

Fln Alignment:

AllPineV4_c43077___IQTIKEIIAGTHSDEEIHATLKESNMDPNETAQKLLTQDPFHEVKRKTEKKKENASNRDYGDTQLKASSQGQGGKAGVLLERGAGRGSYLQHHNSYDVGAGRGSIITRDSKVYQ
D7TD97_______________IQNIKEV-TGDHTEEEIYAMLKDCAMDPNETVQKLLMQDPFHEVRRKRDKRKEHLSNRDSAEPRWRPGMQGQGSR--------GGRVNYSSRHTSHDTGGGRNSAPAKENGISQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain