SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45059

Length: 449 nt

UniGene Fasta

>sp_v2.0_unigene45059
ATGGGGGTGGTTATGAAGATGAGGATGATGGGGGTGATGTGTTGATATATATTGGGCAAGGAGGAAATAATTACATAGCGGATAAGAAGCAGAGCTTTGATCAAAAGCTTGAGAGAGGCAATCTTGCTTTGGAACGAAGCATGCACTATGGAGTTGAGATCAGAGTGATTCGCGGTGTCAAAGCAACATGAGTCCTTCTGGTAAAATTTATATTTATGATGGTCTCTATAAAGTTGAACAGTCTTGGTTAGATAAAGGGCGTTCAGGATGTGGCGTTTTTAAGTACAAGCTTCATAGGCTAGCAGGTCAACCAGAGCTTGGTTCAGCAATTCTAAAAAGCACTAGGATCTGGAAGGCTCAACCCCTAACAAGAGCAGGTCTTCTTTATCCAGACATATCCTTAGGGATTGAGAAGTTACCAGTCCCTCTTTCTAACAATGTAGACAATG

Ace file of the UniGene sp_v2.0_unigene45059

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone-lysine n-methyltransferase, suvh, putative n=1 Tax=Ricinus communis RepID=B9SHW2_RICCO	-	-	1.0e-32	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	set domain protein	-	-	8.5087e-34	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	8.5087e-34	69%
Blast2go	chromosome	GO:0005694	Cellular Component	8.5087e-34	69%
Blast2go	nucleus	GO:0005634	Cellular Component	8.5087e-34	69%

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Pre-SET zinc-binding sub-group	IPR003606	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Pre-SET domain	IPR007728	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQP3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 361 aas, your sequence is shorter than subject: 63 - 830

Fln protein: GGGYEDEDDGGDVLIYIGQGGNNYIADKKQSFDQKLERGNLALERSMHYGVEIRVIRGVKAT*

Protein Length: 64

Fln nts: ATGGGGGTGGTTATGAAGATGAGGATGATGGGGGTGATGTGTTGATATATATTGGGCAAGGAGGAAATAATTACATAGCGGATAAGAAGCAGAGCTTTGATCAAAAGCTTGAGAGAGGCAATCTTGCTTTGGAACGAAGCATGCACTATGGAGTTGAGATCAGAGTGATTCGCGGTGTCAAAGCAACATGAGTCCTTCTGGTAAAATTTATATTTATGATGGTCTCTATAAAGTTGAACAGTCTTGGTTAGATAAAGGGCGTTCAGGATGTGGCGTTTTTAAGTACAAGCTTCATAGGCTAGCAGGTCAACCAGAGCTTGGTTCAGCAATTCTAAAAAGCACTAGGATCTGGAAGGCTCAACCCCTAACAAGAGCAGGTCTTCTTTATCCAGACATATCCTTAGGGATTGAGAAGTTACCAGTCCCTCTTTCTAACAATGTAGACAATG

Fln Alignment:

AllPineV4_c43075___IYIGQGGN----NYIADKKQSFDQKLERGNLALERSMHYGVEIRVIRGVK
B8LQP3_______________LYTGSGGRDLSGNKRTNKEQSFDQKFDKSNEALRVSCKMGYPLRVVRSHK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain