SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45040

Length: 408 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene45040
CTATTACAGATACATTATCAGATCGATTCTGCTGTTCATGCTCGACATCGATGCCATCCGTTGACCAGGCTGGCTGTTGTTATTGAATATTATCAAGCACAAAGCTGCTATTCCCAGTACTTGTCGCTATCTATTCCACCTTATTCTTCTTTCATTAGGTTCCCATGATTTGCAAGATCAATGTTGTCATCTGATGTCATCCCTGCTTGACATATTTAAGCTACTGCCTTCTGAAGAGATCTCTCATGTAGTAGGCAGTCAACTTCAGTCAATAGTATCAAAATTGGTTGCATGTTACCTTAGCTCTGATCATGTAATAGCTGGTGAAAGGACTGTAGAGCCATCTTCTCAAGTGTTATTATTACTGCATCGATTAACTATGGTATGCTGATTGCTCATTGTATAATT

Ace file of the UniGene sp_v2.0_unigene45040 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ataxia telangiectasia mutated, putative n=1 Tax=Ricinus communis RepID=B9RB21_RICCO	-	-	1.0e-20	46%
FL-Next	sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	44%
Blast2go	ataxia telangiectasia	-	-	2.07347e-20	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to gamma radiation	GO:0010332	Biological Process	2.07347e-20	63%
Blast2go	multicellular organism reproduction	GO:0032504	Biological Process	2.07347e-20	63%
Blast2go	DNA repair	GO:0006281	Biological Process	2.07347e-20	63%
Blast2go	reciprocal meiotic recombination	GO:0007131	Biological Process	2.07347e-20	63%
Blast2go	regulation of telomere maintenance	GO:0032204	Biological Process	2.07347e-20	63%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.07347e-20	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M3G7

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 1560 aas, your sequence is shorter than subject: 130 - 3856

Fln protein: YYRYIIRSILLFMLDIDAIR*PGWLLLLNIIKHKAAIPSTCRYLFHLILLSLGSHDLQDQCCHLMSSLLDIFKLLPSEEISHVVGSQLQSIVSKLVACYLSSDHVIAGERTVEPSSQVLLLLHRLTMVC*

Protein Length: 131

Fln nts: CTATTACAGATACATTATCAGATCGATTCTGCTGTTCATGCTCGACATCGATGCCATCCGTTGACCAGGCTGGCTGTTGTTATTGAATATTATCAAGCACAAAGCTGCTATTCCCAGTACTTGTCGCTATCTATTCCACCTTATTCTTCTTTCATTAGGTTCCCATGATTTGCAAGATCAATGTTGTCATCTGATGTCATCCCTGCTTGACATATTTAAGCTACTGCCTTCTGAAGAGATCTCTCATGTAGTAGGCAGTCAACTTCAGTCAATAGTATCAAAATTGGTTGCATGTTACCTTAGCTCTGATCATGTAATAGCTGGTGAAAGGACTGTAGAGCCATCTTCTCAAGTGTTATTATTACTGCATCGATTAACTATGGTATGCTGATTGCTCATTGTATAATT

Fln Alignment:

AllPineV4_c43051___IIKHKAAIPSTCRYLFHLILLSLGSHDLQDQCCHLMSSLLDIFKLLPSEEISHVVGSQLQSIVSKLVACYL--SSDHVIAGERTVEPSSQVLLLLHRLTM
Q9M3G7_______________LLGHRALVPSSLNYIFNLVGQFIGYPSLQDQCCSIASCLLDLFKSNPAKEIVSVLGDQLQFLVSKLVTCCIDAEADTKISGAK----SSQLVNLLHKLVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain