SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45015

Length: 252 nt

UniGene Fasta

>sp_v2.0_unigene45015
AGGCCAGAAGTTCGTGATCTCATGATGTAGATTATTCAGTTTCTGAATGACAATGAAGCACCTTTTACTGTCAATATCTACCCATTTCTGAGTTTATATGATAACCAGTATTTCCCTGTCGACTTTGCCTTCTTTGATGGTACCAACCAACCAGTAATTGATGGGACAACGCAATATTCCAATGTGTTTGATGCAAATCTTGATACTCTGATTTGGGCCCTGAAGAAAGCAGGCTTCCCTAATATGCCCATT

Ace file of the UniGene sp_v2.0_unigene45015

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glucan endo-1,3-beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9RPA4_RICCO	-	-	3.0e-29	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	glucan endo- -beta-glucosidase 8-like	-	-	2.87599e-36	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	2.87599e-36	81%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	2.87599e-36	81%
Blast2go	vacuole	GO:0005773	Cellular Component	2.87599e-36	81%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	2.87599e-36	81%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXT6

Fln msg: Distance to subject end: 224 aas, your sequence is shorter than subject: 84 - 477

Fln protein: RPEVRDLMM*IIQFLNDNEAPFTVNIYPFLSLYDNQYFPVDFAFFDGTNQPVIDGTTQYSNVFDANLDTLIWALKKAGFPNMPI

Protein Length: 85

Fln nts: AGGCCAGAAGTTCGTGATCTCATGATGTAGATTATTCAGTTTCTGAATGACAATGAAGCACCTTTTACTGTCAATATCTACCCATTTCTGAGTTTATATGATAACCAGTATTTCCCTGTCGACTTTGCCTTCTTTGATGGTACCAACCAACCAGTAATTGATGGGACAACGCAATATTCCAATGTGTTTGATGCAAATCTTGATACTCTGATTTGGGCCCTGAAGAAAGCAGGCTTCCCTAATATGCCCATT

Fln Alignment:

AllPineV4_c43022___RPEVRDLMM*IIQFLNDNEAPFTVNIYPFLSLYDNQYFPVDFAFFDGTNQPVIDGTTQYSNVFDANLDTLIWALKKAGFPNMPI
A9NXT6_______________RTDINDLMIQICQFLASNGAPFTVNIYPFLSLYSNENFPVDFAFFDGTGQPLIDGNVQYTNVFDAALDTLFWALKKSGFPNLPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain