SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene45000

Length: 510 nt

UniGene Fasta

>sp_v2.0_unigene45000
AATTGGTGGTGCAGGCGGCGGCAATGGCAACGGAGAAGCAGCCGGAGATGACCAGGGCAGATGGAACGCCGTCACGGAGAAAACGAGGACAAGCTCCCCATGATGACTTCAACGATGTGCAGGGTTTCAGATCATTTGCAAACATGTATAATGCTCAATCCTTTCCTGCTGGCTTGAACTTGCCACCGACTAGTCTTGGTTGCCCAGGTACAAATGGAGAAGTCCCACTGGGTTTTTTTCAAGGCTCAGCAGACTCACGGAAGGCAGAGCAGATACTACAGCAGTTAAGAAAACAAGCGTTAATAAACCCGGATTGCAGAGTTTCTGATTGTAACATTTCGCATTCAGGTGCTATGATGTCACCGATAGGCTTGCCAGAAAATTTTCAAGCATCAGCGGGACTAATCCGCTATAATTCAGCCCCTAATTCATTCCAGGATAATTGTTGTGTTCCTCTAACTGTTTTTCTGGTTCCGTTTTGCTAGATTGGCTGGAGTCGTTATGCTTCAT

Ace file of the UniGene sp_v2.0_unigene45000

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Helix-loop-helix protein 1A n=1 Tax=Pinus taeda RepID=Q9SQ79_PINTA	-	-	7.0e-08	35%
FL-Next	tr=Helix-loop-helix protein 1A; Pinus taeda (Loblolly pine).	-	-	0.0	35%
Blast2go	af103808_1helix-loop-helix protein 1a	-	-	2.23129e-08	54%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9SQ79

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 421 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 154 - 551

Fln protein: MATEKQPEMTRADGTPSRRKRGQAPHDDFNDVQGFRSFANMYNAQSFPAGLNLPPTSLGCPGTNGEVPLGFFQGSADSRKAEQILQQLRKQALINPDCRVSDCNISHSGAMMSPIGLPENFQASAGLIRYNSAPNSFQDNCCVPLTVFLVPFC*

Protein Length: 155

Fln nts: AATTGGTGGTGCAGGCGGCGGCA_-_ATGGCAACGGAGAAGCAGCCGGAGATGACCAGGGCAGATGGAACGCCGTCACGGAGAAAACGAGGACAAGCTCCCCATGATGACTTCAACGATGTGCAGGGTTTCAGATCATTTGCAAACATGTATAATGCTCAATCCTTTCCTGCTGGCTTGAACTTGCCACCGACTAGTCTTGGTTGCCCAGGTACAAATGGAGAAGTCCCACTGGGTTTTTTTCAAGGCTCAGCAGACTCACGGAAGGCAGAGCAGATACTACAGCAGTTAAGAAAACAAGCGTTAATAAACCCGGATTGCAGAGTTTCTGATTGTAACATTTCGCATTCAGGTGCTATGATGTCACCGATAGGCTTGCCAGAAAATTTTCAAGCATCAGCGGGACTAATCCGCTATAATTCAGCCCCTAATTCATTCCAGGATAATTGTTGTGTTCCTCTAACTGTTTTTCTGGTTCCGTTTTGCTAGATTGGCTGGAGTCGTTATGCTTCAT

Fln Alignment:

AllPineV4_c43005___SFANMYNAQSFP--AGLNLPPTSLGCPGTNGEVPLGFFQGSADSRKAEQILQQLRKQALINPDCRVSDCNISHSGAMMSPI--GLPENFQASAGLIRYNSAPNSF
Q9SQ79_______________SYVKMLNSRAQPISTGLSIPSLSVGHTDVNG-IQISFSQYPMDSEKMPQMQQQTNNVDFMDLDYKPPLCNVSQADGVMALTERGSSNNFQGPTGLMRYHSAPSSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain