SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44962

Length: 342 nt

UniGene Fasta

>sp_v2.0_unigene44962
TCAAGGTGCCAGAACTTAACAATAGTTAATCTCTCCTACAACAGATTGAATGGAAGCATGATTCCTCTATGTTCATCTAGCTCCTACAAAGTATTGGATTGACAAACAATAGCTTTCAAGGAGAAATACCACCTCAGCTTGGCAATTCTCCTAATTTAAAGCGTCTTCGACTGGGCCGAAATAATTTCAGTGGCAGCATTCCTTCAGAACTTGGCCAGATTATAGAGCTTGAATTAGTAGATTTATCGTTCAATAATCTTACAGGCTTTATACCTGCAAGTCTAGCTAATTGTAAGAATTTGGCTTCCCTTGATCTGAACAAGAATCAACTTTCAGGTCCAA

Ace file of the UniGene sp_v2.0_unigene44962

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LRR receptor-like serine/threonine-protein kinase GSO2 [Arabidopsis thaliana] sp\|Q9FIZ3.2\|GSO2_ARATH RecName: Full=LRR receptor-like serine/threonine-protein kinase GSO2; AltName: Full=Protein EMBRYO SAC DEVELOPMENT ARREST 23; AltName: Full=Protein GASSHO	-	-	1.0e-23	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	lrr receptor-like serine threonine-protein kinase gso1-like	-	-	6.96159e-26	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development	GO:0009790	Biological Process	6.96159e-26	70%
Blast2go	embryo sac development	GO:0009553	Biological Process	6.96159e-26	70%
Blast2go	epidermis development	GO:0008544	Biological Process	6.96159e-26	70%
Blast2go	catalytic activity	GO:0003824	Molecular Function	6.96159e-26	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLA8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 103 aas, your sequence is shorter than subject: 113 - 914

Fln protein: KVPELNNS*SLLQQIEWKHDSSMFI*LLQSIGLTNNSFQGEIPPQLGNSPNLKRLRLGRNNFSGSIPSELGQIIELELVDLSFNNLTGFIPASLANCKNLASLDLNKNQLSGP

Protein Length: 114

Fln nts: TCAAGGTGCCAGAACTTAACAATAGTTAATCTCTCCTACAACAGATTGAATGGAAGCATGATTCCTCTATGTTCATCTAGCTCCTACAAAGTATTGGATTGACAAACAATAGCTTTCAAGGAGAAATACCACCTCAGCTTGGCAATTCTCCTAATTTAAAGCGTCTTCGACTGGGCCGAAATAATTTCAGTGGCAGCATTCCTTCAGAACTTGGCCAGATTATAGAGCTTGAATTAGTAGATTTATCGTTCAATAATCTTACAGGCTTTATACCTGCAAGTCTAGCTAATTGTAAGAATTTGGCTTCCCTTGATCTGAACAAGAATCAACTTTCAGGTCCAA

Fln Alignment:

AllPineV4_c42956___LLQSIGLTNNSFQGEIPPQLG-------------------------NSPNLKRLRLGRNNFSGSIPSELGQIIELELVDLSFNNLTGFIPASLANCKNLASLDLNKN-QLSG
B8LLA8_______________LLKTMNLSGNNFTGGIPPEFGRLKALRILDLSGNWMLGGSVPKALLNCTHLKWIGLAKMDLTGTIPTEFGRLVELELLDLSWNALGGSIPTSLGNCTSLSHLDLSFNFRLSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain