SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44874

Length: 357 nt

UniGene Fasta

>sp_v2.0_unigene44874
AGATACTGCCCAAGTCCCAGTTGTTTCCTTCTCTGTTACTAGTCCCTTGCTCTCTAACCGCAGATTTCCCTATTTTGTTCGTATGGCACATAGTGATGCCTTGCAGATGCACCCCATTGCAGCCCTGGCTCAGGCCTATGGCTGGAAAAGAGTTACAGCTGTTTATTCGGATGATGAATTCCGTAGCGGTGCAGTCGCTTCTTTAAGTGATGCGCTTAGGGATATTGGGTCGGAATTAGAATATAGATCAGTCATATCGCTAACTGCGGAGCAGGTAGCCATAGAAAAGGAGCTATACAACTTAATGACAAAGGAATCCAGAGTTTTCGTTGCTTATATGCCGTCTGATCTTTGTTC

Ace file of the UniGene sp_v2.0_unigene44874

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate receptor n=2 Tax=Oryza sativa RepID=Q69L11_ORYSJ	-	-	9.0e-24	45%
FL-Next	sp=Glutamate receptor 2.6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	42%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	5.90808e-29	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	5.90808e-29	67%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LFN8

Fln msg: Distance to subject end: 728 aas, your sequence is shorter than subject: 118 - 967

Fln protein: DTAQVPVVSFSVTSPLLSNRRFPYFVRMAHSDALQMHPIAALAQAYGWKRVTAVYSDDEFRSGAVASLSDALRDIGSELEYRSVISLTAEQVAIEKELYNLMTKESRVFVAYMPSDLC

Protein Length: 119

Fln nts: AGATACTGCCCAAGTCCCAGTTGTTTCCTTCTCTGTTACTAGTCCCTTGCTCTCTAACCGCAGATTTCCCTATTTTGTTCGTATGGCACATAGTGATGCCTTGCAGATGCACCCCATTGCAGCCCTGGCTCAGGCCTATGGCTGGAAAAGAGTTACAGCTGTTTATTCGGATGATGAATTCCGTAGCGGTGCAGTCGCTTCTTTAAGTGATGCGCTTAGGGATATTGGGTCGGAATTAGAATATAGATCAGTCATATCGCTAACTGCGGAGCAGGTAGCCATAGAAAAGGAGCTATACAACTTAATGACAAAGGAATCCAGAGTTTTCGTTGCTTATATGCCGTCTGATCTTTGTTC

Fln Alignment:

AllPineV4_c42858___AQVPVVSFSVTSPLLSNRRFPYFVRMAHSDALQMHPIAALAQAYGWKRVTAVYSDDEFRSGAVASLSDALRDIGSELEYRSVISLTAEQVAIEKELYNLMTKESRVFVAYMPSDL
Q9LFN8_______________SQVPIISFSASSPVLDSLRSPYFIRATHDDSSQVHAISAIIESFRWREVVPIYADNEFGEGILPYLVDAFQEINVRIRYRSAISVHSTDDLVKKELYKLMTMPTRVFIVHMLPDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain