SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44776

Length: 534 nt

UniGene Fasta

>sp_v2.0_unigene44776
TACATGCATCCAGCGCCATCCATTTGACAGAGTGATCGCGCTCAACCTCAGTGCTATGGATCTACAAGGCACCATTTCTCCTTCCCTCGCCAATTTGTCGTTTCTCCACTCCCTCGATCTTTCCCACAATGCGCTCCACGGTCATATCCCGCCTCAATTGGGACGTCCCTTTCGTTTGAGAACTCTTTCCCTGCGTTACAATCAGCTGGAAGGATGTATCCCCTTGGAGTTGGGTTCCCTTAAACAATTGCAGTTCCTTTACTTAGGTGCAAACAGCCTCACAGGTACTATTCCCTCTTTCAAAGCAAACCTTTCAGATTTGATTGTTTTAAGAGCAGCAAGCAATAATCTCAGTGGTGCCATTCCACCACAGTTGGGTTTGCTCCCTAATCTTCAAATTCTGCACATAGCTGGAAATGAATTCTTTGGCTCCATTCCCATTTCTTTCTCAAATAACTCTGATTTGATTCATTTGGATATTTCCACAAACAAACTCACTTGTGTCATTCCACAAGAATTGGGTTTGCTTACCAA

Ace file of the UniGene sp_v2.0_unigene44776

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor kinase 1 [Triticum aestivum]	-	-	3.0e-29	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	serine-threonine protein plant-	-	-	6.19186e-39	60%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Rapid ALkalinization Factor	IPR008801	-	-
Sma3	Domain of unknown function DUF1618	IPR011676	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 75 aas, your sequence is shorter than subject: 177 - 551

Fln protein: TCIQRHPFDRVIALNLSAMDLQGTISPSLANLSFLHSLDLSHNALHGHIPPQLGRPFRLRTLSLRYNQLEGCIPLELGSLKQLQFLYLGANSLTGTIPSFKANLSDLIVLRAASNNLSGAIPPQLGLLPNLQILHIAGNEFFGSIPISFSNNSDLIHLDISTNKLTCVIPQELGLLT

Protein Length: 178

Fln nts: TACATGCATCCAGCGCCATCCATTTGACAGAGTGATCGCGCTCAACCTCAGTGCTATGGATCTACAAGGCACCATTTCTCCTTCCCTCGCCAATTTGTCGTTTCTCCACTCCCTCGATCTTTCCCACAATGCGCTCCACGGTCATATCCCGCCTCAATTGGGACGTCCCTTTCGTTTGAGAACTCTTTCCCTGCGTTACAATCAGCTGGAAGGATGTATCCCCTTGGAGTTGGGTTCCCTTAAACAATTGCAGTTCCTTTACTTAGGTGCAAACAGCCTCACAGGTACTATTCCCTCTTTCAAAGCAAACCTTTCAGATTTGATTGTTTTAAGAGCAGCAAGCAATAATCTCAGTGGTGCCATTCCACCACAGTTGGGTTTGCTCCCTAATCTTCAAATTCTGCACATAGCTGGAAATGAATTCTTTGGCTCCATTCCCATTTCTTTCTCAAATAACTCTGATTTGATTCATTTGGATATTTCCACAAACAAACTCACTTGTGTCATTCCACAAGAATTGGGTTTGCTTACCAA

Fln Alignment:

AllPineV4_c42747___TCIQRHPFDRVIALNLSAMDLQGTISPSLANLSF-LHSLDLSHNALHGHIPPQLGRPFRLRTLSLRYNQLEGCIPLELGSLKQLQFLYLGANSLTGTIPSFKANLSDLIVLRAASNNLSGAIPPQLGLLPNLQILHIAGNEFFGSIPISFSNNSDLIHLDISTNKLTCVIPQ
B8LRW5_______________TALSNCPF--LEQIHLGANHLTGTLLSSIQQLSTQLSVFDLSHNEIGGKIPPEIGKLANLTYLNLEWNIFNGSIPSTLGRLQKLERLYLGRNKLQGSIPMEIGGLQTLGLLSLSQNKLSGQIPHSFGQLQQLRDLYLDQNELSGNISPSIGDCLRLEVLDLSHNRFHGNIPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain