SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44646

Length: 391 nt

UniGene Fasta

>sp_v2.0_unigene44646
ATGGGATCCCAGTGTTCCTGAGCCTGCAACTCACAGAACCGAAGAGCTACAGGAGGATCTGTTGTATTATGAGCCAAGCGAAGGATTCGAGCTTCGAAGAATTGGCGCTGGTCTTGCGAACCTCGGGAACACATGCTTTCTGAATTCTGTTCTCCAGTGTCTCACGTATACGCAGCCTCTGGTAGCCTATTTTCGAAGCGGCCAACACAAGGCGACATGCCGCGTAGCTGGGTTCTGTGCCATGTGTGCTCTCCAGGACCATGTCATGATTGCTTTAGATTCATCGGGCAAGATTTTGCTCCTACGACTCTTGTTAGGAACTTGCGATGTATATCTCGCAATTTCCGGATATCAAGACAAGAGGATGTTCATGAATACATGATGAATTTAA

Ace file of the UniGene sp_v2.0_unigene44646

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase (Fragment) n=3 Tax=Vitis vinifera RepID=E0CRZ8_VITVI	-	-	1.0e-32	68%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 23; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Blast2go	ubiquitin carboxyl-terminal hydrolase 23-like	-	-	4.55743e-35	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Fumarate reductase/succinate dehydrogenase, FAD-binding site	IPR003952	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FPS4

Fln msg: Overlapping hits, possible frame ERROR between 295 and 286, Distance to subject end: 658 aas, your sequence is shorter than subject: 130 - 859

Fln protein: WDPSVPEPATHRTEELQEDLLYYEPSEGFELRRIGAGLANLGNTCFLNSVLQCLTYTQPLVAYFRSGQHKATCRVAGFCAMCALQDHVMIALDSxxxxxAPTTLVRNLRCISRNFRISRQEDVHEYMMNL

Protein Length: 131

Fln nts: ATGGGATCCCAGTGTTCCTGAGCCTGCAACTCACAGAACCGAAGAGCTACAGGAGGATCTGTTGTATTATGAGCCAAGCGAAGGATTCGAGCTTCGAAGAATTGGCGCTGGTCTTGCGAACCTCGGGAACACATGCTTTCTGAATTCTGTTCTCCAGTGTCTCACGTATACGCAGCCTCTGGTAGCCTATTTTCGAAGCGGCCAACACAAGGCGACATGCCGCGTAGCTGGGTTCTGTGCCATGTGTGCTCTCCAGGACCATGTCATGATTGCTTTAGATTCAxxxxxxxxxxxxxxxGCTCCTACGACTCTTGTTAGGAACTTGCGATGTATATCTCGCAATTTCCGGATATCAAGACAAGAGGATGTTCATGAATACATGATGAATTTAA

Fln Alignment:

AllPineV4_c42589___YEPSEGFEL--RRIGAGLANLGNTCFLNSVLQCLTYTQPLVAYFRSGQHKATCRVAGFCAMCALQDHVMIALDSSxxxFAPTTLVRNLRCISRNFRISRQEDVHEYMMNL
Q9FPS4_______________FEPDLTFSITFRKIGAGLQNLGNTCFLNSVLQCLTYTEPLAATLQTAAHQKYCHVAGFCALCAIQKHVRTARQANxxxLAPKDLVSNLRCISRNFRNCRQEDAHEYMINL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain