SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44549

Length: 343 nt

UniGene Fasta

>sp_v2.0_unigene44549
GTGCAGGTCAACCACCCCCACCTCCCCTTCCAGGGGCACGAGGACCTGGTGCTCCTCCACCACCTCCTCCACTTGGAAGAGGGAGAGGTGTACCCAATGCGCCTTCACAACCAGGTGGAAGGGGTCGTCCAACTGCAACATCATCGGCACCACTAGCCCCAAAGCGGGCATCTTTGAAGCCACTACATTGGGTTAAAGTTACAAGAGCAATGCAGGGCAGCCTGTGGGCAGATACTCAGAGACAGGAAGATCAGGCAAGGGCTCCAGAAATTGATATGTCTGAACTGGAAAGTCTTTTTTCAGCTACTGTGACATCATCCAATTCAGGAGGCACAGGAATTGG

Ace file of the UniGene sp_v2.0_unigene44549

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Drf_FH1 multi-domain protein	-	-	4.0e-10	58%
FL-Next	sp=Formin-like protein 3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	68%
Blast2go	formin-like protein 14	-	-	1.53598e-25	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	microsporogenesis	GO:0009556	Biological Process	1.53598e-25	72%
Blast2go	microtubule binding	GO:0008017	Molecular Function	1.53598e-25	72%
Blast2go	actin filament binding	GO:0051015	Molecular Function	1.53598e-25	72%
Blast2go	preprophase band	GO:0009574	Cellular Component	1.53598e-25	72%
Blast2go	spindle	GO:0005819	Cellular Component	1.53598e-25	72%
Blast2go	phragmoplast	GO:0009524	Cellular Component	1.53598e-25	72%

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Actin-binding FH2/DRF autoregulatory	IPR003104	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Tensin phosphatase, C2 domain	IPR014020	-	-
Sma3	Actin-binding FH2	IPR015425	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7G6K7

Fln msg: Distance to subject end: 339 aas, your sequence is shorter than subject: 113 - 1234

Fln protein: AGQPPPPPLPGARGPGAPPPPPPLGRGRGVPNAPSQPGGRGRPTATSSAPLAPKRASLKPLHWVKVTRAMQGSLWADTQRQEDQARAPEIDMSELESLFSATVTSSNSGGTGI

Protein Length: 114

Fln nts: GTGCAGGTCAACCACCCCCACCTCCCCTTCCAGGGGCACGAGGACCTGGTGCTCCTCCACCACCTCCTCCACTTGGAAGAGGGAGAGGTGTACCCAATGCGCCTTCACAACCAGGTGGAAGGGGTCGTCCAACTGCAACATCATCGGCACCACTAGCCCCAAAGCGGGCATCTTTGAAGCCACTACATTGGGTTAAAGTTACAAGAGCAATGCAGGGCAGCCTGTGGGCAGATACTCAGAGACAGGAAGATCAGGCAAGGGCTCCAGAAATTGATATGTCTGAACTGGAAAGTCTTTTTTCAGCTACTGTGACATCATCCAATTCAGGAGGCACAGGAATTGG

Fln Alignment:

AllPineV4_c42474___GRGRPTATSSAPLAPKRASLKPLHWVKVTRAMQGSLWADTQRQEDQARAPEIDMSELESLFSATV--TSSNSGGT
Q7G6K7_______________GRGIGLAQQSNP--PKKASLKPLHWVKVTRAMQGSLWEDAQKQGNQARAPDIDLSELESLFSTAVATNASEKGGT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain