SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44472

Length: 266 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene44472
ATGGGGTTGAACAAAGTGATGCATCGTCAAAACAGTTGAAGGACGTTTGCATTCCTCATGAGGTTCTCAATGCAAAACCAGAAAACGTGGAGAGAGAAGCTGAAATAGTAGCCCAAAGTGGTCGCCTTGGAGCCGTCACTATAGCTACCAATATGGCAGGGCGTGGAACAGATATCATCCTTGGTGGAAATGCAGAATTTATGGCAAAGTTGAAGTTACGTGAGCTTCTTATGCCGAGGATTGTTAACACAGTGGATGAAATGCAG

Ace file of the UniGene sp_v2.0_unigene44472

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to Protein translocase subunit secA, chloroplastic n=1 Tax=Vitis vinifera RepID=UPI0001983A2B	-	-	3.0e-32	84%
FL-Next	sp=Protein translocase subunit SecA, chloroplastic; Pisum sativum (Garden pea).	-	-	0.0	83%
Blast2go	protein translocase subunit chloroplastic-like	-	-	8.42394e-39	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to absence of light	GO:0009646	Biological Process	8.42394e-39	91%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	8.42394e-39	91%
Blast2go	regulation of photosynthesis	GO:0010109	Biological Process	8.42394e-39	91%
Blast2go	chloroplast organization	GO:0009658	Biological Process	8.42394e-39	91%
Blast2go	protein transport	GO:0015031	Biological Process	8.42394e-39	91%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	8.42394e-39	91%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	8.42394e-39	91%

Source	InterPros	Term	Type	Identity
Sma3	SecA protein	IPR000185	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	SecA DEAD-like, N-terminal	IPR011115	-	-
Sma3	SecA Wing/Scaffold	IPR011116	-	-
Sma3	SecA preprotein, cross-linking domain	IPR011130	-	-
Sma3	SecA motor DEAD	IPR014018	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q41062

Fln msg: Distance to subject end: 423 aas, your sequence is shorter than subject: 88 - 1011

Fln protein: GVEQSDASSKQLKDVCIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMAKLKLRELLMPRIVNTVDEMQ

Protein Length: 89

Fln nts: ATGGGGTTGAACAAAGTGATGCATCGTCAAAACAGTTGAAGGACGTTTGCATTCCTCATGAGGTTCTCAATGCAAAACCAGAAAACGTGGAGAGAGAAGCTGAAATAGTAGCCCAAAGTGGTCGCCTTGGAGCCGTCACTATAGCTACCAATATGGCAGGGCGTGGAACAGATATCATCCTTGGTGGAAATGCAGAATTTATGGCAAAGTTGAAGTTACGTGAGCTTCTTATGCCGAGGATTGTTAACACAGTGGATGAAATGCAG

Fln Alignment:

AllPineV4_c42394___VEQSDASSKQLKDVCIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMAKLKLRELLMPRIVNTVDE
Q41062_______________VEQSDSLSQQLKEAGILHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREIMMPRVVKLVAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain