SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44399

Length: 494 nt

UniGene Fasta

>sp_v2.0_unigene44399
ATGGGGGCTGCTCCGGCTGCTGCTGCTCCTGTTTCTACGCGTCCGAAATTCTTTTAAATTACACCCTTCCCTAGTCTCTCATAGCTGAGTTTTGAGCTGTGAGTTTTACCGGACAAAGGTCGGAGTTCAGACAAACCCATGACTTCGACAATGGAGGAGCAGAAGCCGCGGAGGCAGCTGAGCGTCCGCAAGAAGCACAGGTCGACGGCCCGGCGGGGCGACACGTTGCTCCACTCGGCCGCCAGGGCGGGCGATTTATCTAAACTCCGGCAAATTCTTGCGCCCGATTCCGACAATGAGGAGTCCGACGTCGAGAACCCCATCGACTCGCGAGATTTAATTGCCCGACAGAACGAAGCGGGGGAGACGACATTATACGCCGCCGCGGACAGTGGCCACGCGGAAATCTTGAAGGAGTTGCTCAATTACGCCTTCGCTCTTGCGTCCGTCAAAACCAACACCGGCAGCGACGCCCTGCACACCGCGGCAAAGCC

Ace file of the UniGene sp_v2.0_unigene44399

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TQD9_VITVI	-	-	8.0e-14	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	ankyrin repeat-containing protein at5g02620-like	-	-	3.16541e-16	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.16541e-16	57%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL37

Fln msg: Distance to subject end: 419 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 118 - 584

Fln protein: MTSTMEEQKPRRQLSVRKKHRSTARRGDTLLHSAARAGDLSKLRQILAPDSDNEESDVENPIDSRDLIARQNEAGETTLYAAADSGHAEILKELLNYAFALASVKTNTGSDALHTAAK

Protein Length: 119

Fln nts: ATGGGGGCTGCTCCGGCTGCTGCTGCTCCTGTTTCTACGCGTCCGAAATTCTTTTAAATTACACCCTTCCCTAGTCTCTCATAGCTGAGTTTTGAGCTGTGAGTTTTACCGGACAAAGGTCGGAGTTCAGACAAACCC_-_ATGACTTCGACAATGGAGGAGCAGAAGCCGCGGAGGCAGCTGAGCGTCCGCAAGAAGCACAGGTCGACGGCCCGGCGGGGCGACACGTTGCTCCACTCGGCCGCCAGGGCGGGCGATTTATCTAAACTCCGGCAAATTCTTGCGCCCGATTCCGACAATGAGGAGTCCGACGTCGAGAACCCCATCGACTCGCGAGATTTAATTGCCCGACAGAACGAAGCGGGGGAGACGACATTATACGCCGCCGCGGACAGTGGCCACGCGGAAATCTTGAAGGAGTTGCTCAATTACGCCTTCGCTCTTGCGTCCGTCAAAACCAACACCGGCAGCGACGCCCTGCACACCGCGGCAAAGCC

Fln Alignment:

AllPineV4_c42310___TARRGDTLLHSAARAGDLSKLRQILAPDSDNEESDVENPIDSRD-------LIARQNEAGETTLYAAADSGHAEILKELLNYAFALASVKTN-TGSDALHTAAK
B8LL37_______________TGRYNDTDLHLAAKKGDLEAVKKIL--DGLHSENGVQNPQADIEMGEIRSCLVDEENELFETPLYIAAEQGHLDVLKELLKFAHPETLVKKNHTGYDVFHIAAK

SSRs (tot: 1)

Start position	End position	Sequence	Length
16	27	GCT GCT GCT GCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain