SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44396

Length: 515 nt

UniGene Fasta

>sp_v2.0_unigene44396
ATGAAAAGGATTTTGAATAGCACAGCAATGAAGTTTTTAAAAAGGGAAGTGTTAGATGACATGGAGGAAAAACTAAATTCTAGCCAAATCGATAACTTAATAGATAGATGTGGTGGAGTTCCACTAATGTTAACCTTAGTAGCAAAAGTATTGAGATTCGAAGAAGACAAGCAAAAGGCTTACAATAGGGTTATGCAGGACCAGCATAATGTAAAGGGTCAAATGTTTGTAAGAATTGGGGGTGAGGAGGAGTATTTCTTTGCATACGACTCTCTTCCTGATGTGTGCAAAGATCCATTTCTTGATGTGTGCTGCTTTTTCAAAGGATGGGATTGGGACACAGTGGCAGATATTGTTGGAGAGGATGAGTTGGATATACTAGAAAGGAGAGCACTGGTCACCAGAGGTATTGATAGCGCTGTGTCTGTACATGACGTCATCTTGACAATTGGTCAACAAAAGGCAAAGGGAACCAGATTTAAATTCGCCAGCACAAGTGAGTTTGAGAAGTTTCG

Ace file of the UniGene sp_v2.0_unigene44396

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR n=1 Tax=Medicago truncatula RepID=Q2HUD1_MEDTR	-	-	1.0e-06	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	tmv resistance protein n	-	-	0.0	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPX1

Fln msg: Distance to subject end: 383 aas, your sequence is shorter than subject: 171 - 1011

Fln protein: MKRILNSTAMKFLKREVLDDMEEKLNSSQIDNLIDRCGGVPLMLTLVAKVLRFEEDKQKAYNRVMQDQHNVKGQMFVRIGGEEEYFFAYDSLPDVCKDPFLDVCCFFKGWDWDTVADIVGEDELDILERRALVTRGIDSAVSVHDVILTIGQQKAKGTRFKFASTSEFEKF

Protein Length: 172

Fln nts: ATGAAAAGGATTTTGAATAGCACAGCAATGAAGTTTTTAAAAAGGGAAGTGTTAGATGACATGGAGGAAAAACTAAATTCTAGCCAAATCGATAACTTAATAGATAGATGTGGTGGAGTTCCACTAATGTTAACCTTAGTAGCAAAAGTATTGAGATTCGAAGAAGACAAGCAAAAGGCTTACAATAGGGTTATGCAGGACCAGCATAATGTAAAGGGTCAAATGTTTGTAAGAATTGGGGGTGAGGAGGAGTATTTCTTTGCATACGACTCTCTTCCTGATGTGTGCAAAGATCCATTTCTTGATGTGTGCTGCTTTTTCAAAGGATGGGATTGGGACACAGTGGCAGATATTGTTGGAGAGGATGAGTTGGATATACTAGAAAGGAGAGCACTGGTCACCAGAGGTATTGATAGCGCTGTGTCTGTACATGACGTCATCTTGACAATTGGTCAACAAAAGGCAAAGGGAACCAGATTTAAATTCGCCAGCACAAGTGAGTTTGAGAAGTTTCG

Fln Alignment:

AllPineV4_c42306___MKRILNSTAMKFLKREVLDDMEEKLNSSQIDNLIDRCGGVPLMLTLVAKVLRFEEDKQKAYNRVMQDQHNVKGQMFVRIGGEEEYFFAYDSLPDVCKDPFLDVCCFFKGWDWDTVADIVGEDELDILERRALVTRGIDSAVSVHDVILTIGQQKAKGTRFKFASTSEFEKF
C0PPX1_______________MKAISSMEATNLLKMEMFGHMETILYSYQVNHIIKKCGGIPLMLKLVARALRFAKDKEEV-DQVLDELEKLKGEDFGR-DKIESYLFAYDKLPEDCKDPFLDICSYFEGWDWEIVANIMGGRELKMLADRALITKNTNGVISVHDVILTLGRRKSEGVRFMFISGSQFKKF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain