SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44385

Length: 385 nt

UniGene Fasta

>sp_v2.0_unigene44385
GGAACAAAAGTATGATTTTGTATTTGCCTTACCTTAGCAGACATATGTGACAGGTGGAATTATATATTCATCACGTCAGAGAGGCTGCAAAGGTGGTGCAACTTCTGTCTATATTGGATCCAAAAACTGGCTTGGTTCGCAGGAAAGCGCCTCGCTGTTTAACTGCCAACCAGAATGCCTTCATGGAGGTGGTCCCTGACAGGGGAGCTTGCATTGAAGAATATAACAATTATAGGGCCCTAGGAAGAGTAACATTGCGTGCTGCTGGTAGAACTATTGCTAACTCATCCAAGTGTACACTATTTTCTGGTCTTCTTTATCACAAAGAGCAGCTATTCACTGAGGGTTTTCTGTACCATGCTCATCATATTTATTCGGCATGTTG

Ace file of the UniGene sp_v2.0_unigene44385

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative translation elongation factor 2EF1A / eIF-2-gamma [Arabidopsis thaliana] dbj\|BAH19422.1\| AT5G10630 [Arabidopsis thaliana] gb\|AED91574.1\| putative translation elongation factor 2EF1A / eIF-2-gamma [Arabidopsis thaliana]	-	-	2.0e-17	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	translation elongation factor 2ef1a eif-2-gamma	-	-	9.97156e-23	74%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNF8

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 21 aas, your sequence is shorter than subject: 127 - 466

Fln protein: NKSMILYLPYLSRHM*QVELYIHHVREAAKVVQLLSILDPKTGLVRRKAPRCLTANQNAFMEVVPDRGACIEEYNNYRALGRVTLRAAGRTIANSSKCTLFSGLLYHKEQLFTEGFLYHAHHIYSAC

Protein Length: 128

Fln nts: GGAACAAAAGTATGATTTTGTATTTGCCTTACCTTAGCAGACATATGTGACAGGTGGAATTATATATTCATCACGTCAGAGAGGCTGCAAAGGTGGTGCAACTTCTGTCTATATTGGATCCAAAAACTGGCTTGGTTCGCAGGAAAGCGCCTCGCTGTTTAACTGCCAACCAGAATGCCTTCATGGAGGTGGTCCCTGACAGGGGAGCTTGCATTGAAGAATATAACAATTATAGGGCCCTAGGAAGAGTAACATTGCGTGCTGCTGGTAGAACTATTGCTAACTCATCCAAGTGTACACTATTTTCTGGTCTTCTTTATCACAAAGAGCAGCTATTCACTGAGGGTTTTCTGTACCATGCTCATCATATTTATTCGGCATGTTG

Fln Alignment:

AllPineV4_c42294___LYIHHVREAAKVVQLLSILDPKTGLVRRKAPRCLTANQNAFMEVVPDRGACIEEYNNYRALGRVTLRAAGRTIA
B8LNF8_______________LHIHSVVEECEIMELLEQMDPRTKKPMKKKILFVKTGAVVLCRIQVNDTICVEKFSDFPQLGRFTLRDEGKTVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain