SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44384

Length: 322 nt

UniGene Fasta

>sp_v2.0_unigene44384
GGTAGCTTATAGATATTGGAATGAGGGTTAAAGATGTCAGGCCAGAACTTGTGCAAGTTGCTCGTAATCTCCTTATTGATCCTGCCTTGCTTGAGTATCCATTTCTCCACTCAGTACTTTACTGCATCTGCATGGGTTGCAGGGGAATATATTGAACACTCGCAAAATCCTTTCGAGATTATAGAAGCTCTTCTGCAGCCTCGGACAAATCTTTTGCCACCATCTGTGAGATGTGTTTATCTCCAGTCTTTACTCAAAGTTCTTGTATTCTGCTATTACTCATACATGAAGAGAAGCAATCCTTTGTATCTGAATCTTCTGT

Ace file of the UniGene sp_v2.0_unigene44384

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP-3 complex subunit delta [Arabidopsis thaliana] ref\|NP_849785.1\| AP-3 complex subunit delta [Arabidopsis thaliana] ref\|NP_001031156.1\| AP-3 complex subunit delta [Arabidopsis thaliana] sp\|Q9C744.1\|AP3D_ARATH RecName: Full=AP-3 complex subunit delta; Alt	-	-	4.0e-25	59%
FL-Next	sp=AP-3 complex subunit delta; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Blast2go	ap-3 complex subunit delta	-	-	5.07798e-27	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	5.07798e-27	77%

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Adaptor protein complex AP-3, delta subunit	IPR017105	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C744

Fln msg: Separated hits, possible frame ERROR between 119 and 121, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 332 aas, your sequence is shorter than subject: 107 - 869

Fln protein: *LIDIGMRVKDVRPELVQVARNLLIDPALLEYPFLHSVxxTASAWVAGEYIEHSQNPFEIIEALLQPRTNLLPPSVRCVYLQSLLKVLVFCYYSYMKRSNPLYLNLL

Protein Length: 108

Fln nts: GGTAGCTTATAGATATTGGAATGAGGGTTAAAGATGTCAGGCCAGAACTTGTGCAAGTTGCTCGTAATCTCCTTATTGATCCTGCCTTGCTTGAGTATCCATTTCTCCACTCAGTACTxxxTACTGCATCTGCATGGGTTGCAGGGGAATATATTGAACACTCGCAAAATCCTTTCGAGATTATAGAAGCTCTTCTGCAGCCTCGGACAAATCTTTTGCCACCATCTGTGAGATGTGTTTATCTCCAGTCTTTACTCAAAGTTCTTGTATTCTGCTATTACTCATACATGAAGAGAAGCAATCCTTTGTATCTGAATCTTCTGT

Fln Alignment:

AllPineV4_c42293___LIDIGMRVKDVRPELVQVARNLLIDPALLEYPFLHSVLxTASAWVAGEYIEHSQNPFEIIEALLQPRTNLLPPSVRCVYLQSLLKVLVFCYYSYMKRSNP
Q9C744_______________LIDIGMRVRDARPQLVRVSWALLIDPALLGNLFLHPILxSAAAWVSGEYVEFSKNPYETVEALLQPRTDLLPPSIKAIYIHSAFKVLVFCLGSYFSSQEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain