SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44379

Length: 335 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene44379
ATGGGGTGCCCTTGTAGATACCTATGCCAAATGTGGAAGTATAGAGGCGGCACACTGGACTTTTGATAGGATACTTCGAAAAAATGTGGTTTCATGGAATACAATCATCGCAGGTTATGGAATGCATGGATATGGTGAAGATGCTCTCAAACTCTTCCATGACATGCAAAAGGCAGGTACGAATCCAAATTACATAACATTTATTGCTATTCTGTCTGCATGTAGTCATGCAGGCCTAGTGGATAAAGGTTGGCAATACTTCGAGTCCATGAGTCATCAGTATGGTATCACCCCTATGGTGGAGCACTATACATGCATGGTTGACATTCTTGGAC

Ace file of the UniGene sp_v2.0_unigene44379 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to Tetratricopeptide-like helical n=1 Tax=Vitis vinifera RepID=UPI0001984A05	-	-	5.0e-35	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	protein	-	-	2.69946e-41	76%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3		IPR003612	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 111 - 232

Fln protein: WGALVDTYAKCGSIEAAHWTFDRILRKNVVSWNTIIAGYGMHGYGEDALKLFHDMQKAGTNPNYITFIAILSACSHAGLVDKGWQYFESMSHQYGITPMVEHYTCMVDILG

Protein Length: 112

Fln nts: ATGGGGTGCCCTTGTAGATACCTATGCCAAATGTGGAAGTATAGAGGCGGCACACTGGACTTTTGATAGGATACTTCGAAAAAATGTGGTTTCATGGAATACAATCATCGCAGGTTATGGAATGCATGGATATGGTGAAGATGCTCTCAAACTCTTCCATGACATGCAAAAGGCAGGTACGAATCCAAATTACATAACATTTATTGCTATTCTGTCTGCATGTAGTCATGCAGGCCTAGTGGATAAAGGTTGGCAATACTTCGAGTCCATGAGTCATCAGTATGGTATCACCCCTATGGTGGAGCACTATACATGCATGGTTGACATTCTTGGAC

Fln Alignment:

AllPineV4_c42286___LVDTYAKCGSIEAAHWTFDRILRKNVVSWNTIIAGYGMHGYGEDALKLFHDMQKAGTNPNYITFIAILSACSHAGLVDKGWQYFESMSHQYGITPMVEHYTCMVDILG
D5AB53_______________LIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSMSVDYHITPVMEHYCCMVDLLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain