SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44296

Length: 419 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene44296
GGACAGTGAAGTAGGTTATGTGGTGATCAAGAAAGCAAGGACATTTCTGTTGCATACGGAAATATCGGACTTGACTATAGAGATTCAGCGAATGTTAGAAGAGTTTGCAGACATATTGTAGATGACTTGCTAGACAAGTTTCCCCCAAGCGGAGCATTAGTCACCACACCAATTTCATACCCGGAGCCAGTTTGCCGAATAAAGCAGCATACTGAATGAGCCCTAAGGATAATGAAGAAATTAGGAAAAAGGTGCAAGAACTGTTGGACAAGGGTTTTATAAGGGAGAGCTTAAGCCCTTGTGTTATGCCAACAGTTCTCGCTCCCAAGAAAGGAGGGGAATGGTAGATGTGCACCAAATCAAGGGCCATTGATAAAATTACCATCTGGTATAGATTTCCATTACCGCGAATGGATGAT

Ace file of the UniGene sp_v2.0_unigene44296 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA	-	-	2.0e-27	60%
FL-Next	tr=Gag-pol polyprotein; Silene latifolia (White campion) (Bladder campion).	-	-	0.0	60%
Blast2go	gag-pol polyprotein	-	-	2.71978e-31	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	2.71978e-31	73%
Blast2go	binding	GO:0005488	Molecular Function	2.71978e-31	73%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: E7BQD5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 796 aas, your sequence is shorter than subject: 139 - 1475

Fln protein: TVK*VMW*SRKQGHFCCIRKYRT*L*RFSEC*KSLQTYCR*LARQVSPKRSISHHTNFIPGASLPNKAAY*MSPKDNEEIRKKVQELLDKGFIRESLSPCVMPTVLAPKKGGEW*MCTKSRAIDKITIWYRFPLPRMDD

Protein Length: 140

Fln nts: GGACAGTGAAGTAGGTTATGTGGTGATCAAGAAAGCAAGGACATTTCTGTTGCATACGGAAATATCGGACTTGACTATAGAGATTCAGCGAATGTTAGAAGAGTTTGCAGACATATTGTAGATGACTTGCTAGACAAGTTTCCCCCAAGCGGAGCATTAGTCACCACACCAATTTCATACCCGGAGCCAGTTTGCCGAATAAAGCAGCATACTGAATGAGCCCTAAGGATAATGAAGAAATTAGGAAAAAGGTGCAAGAACTGTTGGACAAGGGTTTTATAAGGGAGAGCTTAAGCCCTTGTGTTATGCCAACAGTTCTCGCTCCCAAGAAAGGAGGGGAATGGTAGATGTGCACCAAATCAAGGGCCATTGATAAAATTACCATCTGGTATAGATTTCCATTACCGCGAATGGATGAT

Fln Alignment:

AllPineV4_c42189___PKRSISHHTNFIPGASLPNKAAY*MSPKDNEEIRKKVQELLDKGFIRESLSPCVMPTVLAPKKGGEW*MCTKSRAIDKITIWYRFPLPRMDD
E7BQD5_______________PLRGIEHQIDFIPGATLPNKAAYRSDPKATQELQQQIGELVSKGFVRESLSPCSVPALLVPKKDGSWRMCTDSRAINNITIKYRFPIPRLDD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain