SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44241

Length: 266 nt

UniGene Fasta

>sp_v2.0_unigene44241
ACTGTTGGACATGTATGCCAAATGCGGAAGCATAGATGATGCTGATAAAATTTTCGGTGTGATGCCTGAGCGGAATTTAGTCTCATGGAATGCCATGATATCAGCATATGCCCAAAATGGTTGTGGCATGGAGGCACTTCAACTCTTTGAACAAATGCTACAGGAAGGCACAAAGCCAGATCATGTCAGCTTGATTTGTGTTCTTGCTGCGTGTAGCCATGCAGGCCTAGTGAATGAAGGTCGCAGCTACTTTGATTGCATACATT

Ace file of the UniGene sp_v2.0_unigene44241

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SIT7.1\|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb\|AAD22682.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC06244.1\| pentatricopeptide repe	-	-	4.0e-23	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	pentatricopeptide repeat-containing	-	-	8.16804e-32	77%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3		IPR003612	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	IPR010041	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	PDZ-binding protein, CRIPT	IPR019367	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Distance to subject end: 74 aas, your sequence is shorter than subject: 88 - 232

Fln protein: LLDMYAKCGSIDDADKIFGVMPERNLVSWNAMISAYAQNGCGMEALQLFEQMLQEGTKPDHVSLICVLAACSHAGLVNEGRSYFDCIH

Protein Length: 89

Fln nts: ACTGTTGGACATGTATGCCAAATGCGGAAGCATAGATGATGCTGATAAAATTTTCGGTGTGATGCCTGAGCGGAATTTAGTCTCATGGAATGCCATGATATCAGCATATGCCCAAAATGGTTGTGGCATGGAGGCACTTCAACTCTTTGAACAAATGCTACAGGAAGGCACAAAGCCAGATCATGTCAGCTTGATTTGTGTTCTTGCTGCGTGTAGCCATGCAGGCCTAGTGAATGAAGGTCGCAGCTACTTTGATTGCATACATT

Fln Alignment:

AllPineV4_c42127___LLDMYAKCGSIDDADKIFGVMPERNLVSWNAMISAYAQNGCGMEALQLFEQMLQEGTKPDHVSLICVLAACSHAGLVNEGRSYFD
D5AB53_______________LIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain