SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44219

Length: 449 nt

UniGene Fasta

>sp_v2.0_unigene44219
ATGGGATGTAATTGCAGCAACAGCAGCTACCATGCTCCCAATGAGGTGAGGTTGTGCGAGAAGGGCCGATCGAATGATGCCTTCCACAGTATTAGGAATCAGCCTCTGAATTCCGTTGCTTATCACAGTCTTTTGCAGGGTTGCATCGACAGAAGAGTTTTGCCAGAAGGCAAATTAATACATGCTCACATCATTCAGTCAGGTTTTGTATGCCCAGACGTATCTTTAGGAAATAAACTCGTTACCATTTATGCCAAGCACGGTAGCCTGGCGGATGCTTGTAGAGTTTTGGATCAAATGGCCGAACGGGACGTTCTGTCATGGACTGTCATGATTTCAGCTTATGCCAGGAATGGGTGTGCGGAAGAAGCCCTGGAACTGTATTATAAAATGCGAGGAACAGGTATCCAACCCGATCGATTCACCTTTGCAAGTGTGCTGCCTGCATG

Ace file of the UniGene sp_v2.0_unigene44219

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SL84_RICCO	-	-	9.0e-21	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	pentatricopeptide repeat-containing	-	-	7.49102e-40	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 145 aas, your sequence is shorter than subject: 149 - 644

Fln protein: MGCNCSNSSYHAPNEVRLCEKGRSNDAFHSIRNQPLNSVAYHSLLQGCIDRRVLPEGKLIHAHIIQSGFVCPDVSLGNKLVTIYAKHGSLADACRVLDQMAERDVLSWTVMISAYARNGCAEEALELYYKMRGTGIQPDRFTFASVLPA

Protein Length: 150

Fln nts: ATGGGATGTAATTGCAGCAACAGCAGCTACCATGCTCCCAATGAGGTGAGGTTGTGCGAGAAGGGCCGATCGAATGATGCCTTCCACAGTATTAGGAATCAGCCTCTGAATTCCGTTGCTTATCACAGTCTTTTGCAGGGTTGCATCGACAGAAGAGTTTTGCCAGAAGGCAAATTAATACATGCTCACATCATTCAGTCAGGTTTTGTATGCCCAGACGTATCTTTAGGAAATAAACTCGTTACCATTTATGCCAAGCACGGTAGCCTGGCGGATGCTTGTAGAGTTTTGGATCAAATGGCCGAACGGGACGTTCTGTCATGGACTGTCATGATTTCAGCTTATGCCAGGAATGGGTGTGCGGAAGAAGCCCTGGAACTGTATTATAAAATGCGAGGAACAGGTATCCAACCCGATCGATTCACCTTTGCAAGTGTGCTGCCTGCATG

Fln Alignment:

AllPineV4_c42102___LCEKGRSNDAFHSIRNQPLNSV-----AYHSLLQGCIDRRVLPEGKLIHAHIIQSGFVCPDVSLGNKLVTIYAKHGSLADACRVLDQMAERDVLSWTVMISAYARNGCAEEALELYYKMRGTGIQPDRFTFASVLPA
B8LLJ0_______________LCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain