SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44165

Length: 412 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene44165
CCTTCTCATGTAACAAGTTGGAGGGAATGATGCCACTTATTAAAATGCAATTACAAATTGCGAAAAGGTTATATAACAACAGTCTTCGCTATTGGCTGTTGGAGTATCTTCGGAGACAACCTAGGGAGAAGGAATTTCGTGCTTTGATCCTTAGATTTATAAAAGATAAAACAGCAGCATTACTTCTTGTTGAGGTAGGAATTCAAGCATCTGTTCAGGTATTTTCAGGCGCTCAGGTTGGGGATGAAATAATGGTACAAGTGCTTGAAGCTCTTCCTCGAAAGGAAATATTGTCCTTGAAGGAGGTGTTATCTACATGATTGTCTCCAGTCTCTGCATATTATGTACCATATACCACTCAATGCAATTGCCATGTTGTCCTTGTTATATGTCCAACTTAATGATTCCATGC

Ace file of the UniGene sp_v2.0_unigene44165

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribonuclease II-like protein [Arabidopsis thaliana]	-	-	1.0e-23	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%
Blast2go	exoribonuclease ii	-	-	9.45572e-33	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	rRNA processing	GO:0006364	Biological Process	9.45572e-33	69%
Blast2go	chloroplast organization	GO:0009658	Biological Process	9.45572e-33	69%
Blast2go	3'-5'-exoribonuclease activity	GO:0000175	Molecular Function	9.45572e-33	69%
Blast2go	mitochondrion	GO:0005739	Cellular Component	9.45572e-33	69%
Blast2go	chloroplast	GO:0009507	Cellular Component	9.45572e-33	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease II/R	IPR001900	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7THN0

Fln msg: your sequence is shorter than subject: 106 - 720

Fln protein: FSCNKLEGMMPLIKMQLQIAKRLYNNSLRYWLLEYLRRQPREKEFRALILRFIKDKTAALLLVEVGIQASVQVFSGAQVGDEIMVQVLEALPRKEILSLKEVLST*

Protein Length: 107

Fln nts: CCTTCTCATGTAACAAGTTGGAGGGAATGATGCCACTTATTAAAATGCAATTACAAATTGCGAAAAGGTTATATAACAACAGTCTTCGCTATTGGCTGTTGGAGTATCTTCGGAGACAACCTAGGGAGAAGGAATTTCGTGCTTTGATCCTTAGATTTATAAAAGATAAAACAGCAGCATTACTTCTTGTTGAGGTAGGAATTCAAGCATCTGTTCAGGTATTTTCAGGCGCTCAGGTTGGGGATGAAATAATGGTACAAGTGCTTGAAGCTCTTCCTCGAAAGGAAATATTGTCCTTGAAGGAGGTGTTATCTACATGA___TTGTCTCCAGTCTCTGCATATTATGTACCATATACCACTCAATGCAATTGCCATGTTGTCCTTGTTATATGTCCAACTTAATGATTCCATGC

Fln Alignment:

AllPineV4_c42037___FSCNKLEGMMPLIKMQLQIAKRLYNNSLRYWLLEYLRRQPREKEFRALILRFIKDKTAALLLVEVGIQASVQVFSGAQVGDEIMVQVLEALPRKEILSLKEV
D7THN0_______________FSAGQMEGMAASVNMHARLAKRLCSSSLRYWILEFIRRQPKEKKFRALVLRFIKDRIAALLLMEVGLQASAWVSLGKQIGDEVEVKVEEAHPRDDVLSLKEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain