SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene44141

Length: 242 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene44141
TTACAGTAGTGATTTAAGACCCACTGCTAAGCAGTTGTGGAAGCCTTATATTGGTGTTTTGGAGGTTGGTATATTGAGTGCCCAAAACTTGCTTCCCATGAAAACAAAAGACGGGCGAGGGGCTACTGACACCTACTGCGTTGCCAAATATGGTCAGAAGTGGGTCAGGACAAGGACAATTATTGACAGCTTCAACCCAAAGTGGAATGAGCAATATACTTGGGAAGTTTATGATCCTTGCA

Ace file of the UniGene sp_v2.0_unigene44141

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana]	-	-	5.0e-37	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	c2 domain-containing protein	-	-	1.4013e-45	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	1.4013e-45	91%
Blast2go	cell wall	GO:0005618	Cellular Component	1.4013e-45	91%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Glutathione peroxidase	IPR000889	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Molybdopterin oxidoreductase, prokaryotic, conserved site	IPR006655	-	-
Sma3	Protein of unknown function DUF1118	IPR009500	-	-
Sma3		IPR012335	-	-
Sma3	Phosphoribosyltransferase C-terminal	IPR013583	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL63

Fln msg: Distance to subject end: 352 aas, your sequence is shorter than subject: 80 - 758

Fln protein: YSSDLRPTAKQLWKPYIGVLEVGILSAQNLLPMKTKDGRGATDTYCVAKYGQKWVRTRTIIDSFNPKWNEQYTWEVYDPC

Protein Length: 81

Fln nts: TTACAGTAGTGATTTAAGACCCACTGCTAAGCAGTTGTGGAAGCCTTATATTGGTGTTTTGGAGGTTGGTATATTGAGTGCCCAAAACTTGCTTCCCATGAAAACAAAAGACGGGCGAGGGGCTACTGACACCTACTGCGTTGCCAAATATGGTCAGAAGTGGGTCAGGACAAGGACAATTATTGACAGCTTCAACCCAAAGTGGAATGAGCAATATACTTGGGAAGTTTATGATCCTTGCA

Fln Alignment:

AllPineV4_c42010___YSSDLRPTAKQLWKPYIGVLEVGILSAQNLLPMKTKDGRGATDTYCVAKYGQKWVRTRTIIDSFNPKWNEQYTWEVYDPC
B8LL63_______________YSSDLRPTHKHLWKSYIGILQVGILSAQNLLPMKTKDGRGTTDAYCVAKYGQKWVRTRTLIDTLNPKWNEQYTWEVYDPC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain