SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43969

Length: 410 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43969
CAGGTGCTATCCCTTCCTTGATCAGGCTTCAAAAGTTGGAAAGGTTGTATCTGTCGGGTAACGATTTACAGGGAAATATCCCCACTGAAATCGGACACCTCAAAAGGATGGGGCTCCTACAACTCGCGCGGAATAATCTCTCTGGAAGAATCCCCGAGTCTCTTGCTGGCCTACAGCAGCTTAGAAAGTTACGTCTGGCACATAATCAGTTATCAGGTAATATACCTGCAAGTCTAGGGAAATGAGTGACTTTGGAGCGGCTAGACTTATCATACAACAGGCTCAGTGGGCGCATACCTCCGGAGGTTGCAGGTCTTGTAAATTTAGCTTTCTATTTCAATCTTTCTAACAATTTATTAGAGGGTCCTATGCCTTTGGAACTCAGTAAGATGACTAAGGTTCAAGCTATA

Ace file of the UniGene sp_v2.0_unigene43969 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os06g0186300 protein n=3 Tax=Oryza sativa Japonica Group RepID=Q0DE01_ORYSJ	-	-	6.0e-35	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	leucine-rich repeat receptor-like serine threonine-protein kinase at2g24130-like	-	-	9.52883e-44	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	9.52883e-44	69%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 136 - 551

Fln protein: GAIPSLIRLQKLERLYLSGNDLQGNIPTEIGHLKRMGLLQLARNNLSGRIPESLAGLQQLRKLRLAHNQLSGNIPASLGK*VTLERLDLSYNRLSGRIPPEVAGLVNLAFYFNLSNNLLEGPMPLELSKMTKVQAI

Protein Length: 137

Fln nts: CAGGTGCTATCCCTTCCTTGATCAGGCTTCAAAAGTTGGAAAGGTTGTATCTGTCGGGTAACGATTTACAGGGAAATATCCCCACTGAAATCGGACACCTCAAAAGGATGGGGCTCCTACAACTCGCGCGGAATAATCTCTCTGGAAGAATCCCCGAGTCTCTTGCTGGCCTACAGCAGCTTAGAAAGTTACGTCTGGCACATAATCAGTTATCAGGTAATATACCTGCAAGTCTAGGGAAATGAGTGACTTTGGAGCGGCTAGACTTATCATACAACAGGCTCAGTGGGCGCATACCTCCGGAGGTTGCAGGTCTTGTAAATTTAGCTTTCTATTTCAATCTTTCTAACAATTTATTAGAGGGTCCTATGCCTTTGGAACTCAGTAAGATGACTAAGGTTCAAGCTATA

Fln Alignment:

AllPineV4_c41815___GAIPSLI-RLQKLERLYLSGNDLQGNIPTEIGHLKRMGLLQLARNNLSGRIPESLAGLQQLRKLRLAHNQLSGNIPASLGK*VTLERLDLSYNRLSGRIPPEVAGLVNLAFYFNLSNNLLEGPMPLELSKMTKVQAI
B8LRW5_______________GSIPSTLGRLQKLERLYLGRNKLQGSIPMEIGGLQTLGLLSLSQNKLSGQIPHSFGQLQQLRDLYLDQNELSGNISPSIGDCLRLEVLDLSHNRFHGNIPRTVAGLRNLQFYFNLSSNLLEVSLPLEISKMTMVQEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain