SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43961

Length: 328 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43961
ATGAATTAGAAGCTCCCATCATCGACGCTTTTCCCATAGAAGCCGGACTCTGTCCCATTGGGCCTTTGATTCCTTCTGGCTTCCTCAGTACACATGATTCAGATTTCAATAAAACAGAATTAATGAGGCCGGCTAGCTTCTGGGCCGAGGAACTGGAATGTTTGGATTGGCTAGACAAGCAATCTGCCCAGTCCGTCATCTATGTCTCCTTTGGCAGCCAGGCCGTGATGAATGAGAGGCAACTCGAGGAGCTTGCTCTGGGTCTCGAGGCGACACAGAGGCCTTTTCTGTGGGTTCTTCGCTGCGATGTACTGAATAGCACGGGCTG

Ace file of the UniGene sp_v2.0_unigene43961 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucosyltransferase HRA25 [Phaseolus vulgaris]	-	-	2.0e-15	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	udp-glucosyltransferase hra25	-	-	5.27429e-21	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMP4

Fln msg: Distance to subject end: 149 aas, your sequence is shorter than subject: 108 - 357

Fln protein: ELEAPIIDAFPIEAGLCPIGPLIPSGFLSTHDSDFNKTELMRPASFWAEELECLDWLDKQSAQSVIYVSFGSQAVMNERQLEELALGLEATQRPFLWVLRCDVLNSTG

Protein Length: 109

Fln nts: ATGAATTAGAAGCTCCCATCATCGACGCTTTTCCCATAGAAGCCGGACTCTGTCCCATTGGGCCTTTGATTCCTTCTGGCTTCCTCAGTACACATGATTCAGATTTCAATAAAACAGAATTAATGAGGCCGGCTAGCTTCTGGGCCGAGGAACTGGAATGTTTGGATTGGCTAGACAAGCAATCTGCCCAGTCCGTCATCTATGTCTCCTTTGGCAGCCAGGCCGTGATGAATGAGAGGCAACTCGAGGAGCTTGCTCTGGGTCTCGAGGCGACACAGAGGCCTTTTCTGTGGGTTCTTCGCTGCGATGTACTGAATAGCACGGGCTG

Fln Alignment:

AllPineV4_c41804___CP---IGPLIPSGFLSTHDSDFNKTELMRPASFWAEELECLDWLDKQSAQSVIYVSFGSQAVMNERQLEELALGLEATQRPFLWVLRCDV
B8LMP4_______________CPALAIGPLFLPNFLEGSDSC---------SSLWEEEEICLTWLDMQQPGSVIYVSFGSLAVKSEQQLEQLALGLESSGQPFLWVLRLDI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain