SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43904

Length: 216 nt

UniGene Fasta

>sp_v2.0_unigene43904
AAGACGACTGTCCAGGTGACTTGAATTTCTGGCATCGCCATCCTTCTTGTGGTTCCTGGCCTTTCTCGACCCGAGATCATGGTTGGCCCATCTCAGACTGCTCCTCTCTAGGCTTAAAGGCTGCATTAGCGTTGGCACAATTGCCTCAAGACATTGTGGGGAAACCAATTTCATCACAACGGATTTTTGATTGTGTTGATTATTTGCTTTCCATGC

Ace file of the UniGene sp_v2.0_unigene43904

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cycloartenol synthase n=2 Tax=Pinaceae RepID=Q9FQM1_ABIMA	-	-	5.0e-24	70%
FL-Next	tr=Cycloartenol synthase; Abies magnifica (Red fir).	-	-	0.0	84%
Blast2go	cycloartenol synthase	-	-	1.41795e-28	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cycloartenol synthase.	EC:5.4.99.8	-	1.41795e-28	84%

Source	KEGGs	Term	e value	Identity
Blast2go	Steroid biosynthesis	00100	1.41795e-28	84%
Blast2go	Biosynthesis of terpenoids and steroids	01062	1.41795e-28	84%
Blast2go	Biosynthesis of plant hormones	01070	1.41795e-28	84%
Blast2go	Metabolic pathways	01100	1.41795e-28	84%
Blast2go	Biosynthesis of secondary metabolites	01110	1.41795e-28	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	1.41795e-28	84%
Blast2go	pollen development	GO:0009555	Biological Process	1.41795e-28	84%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	1.41795e-28	84%
Blast2go	pentacyclic triterpenoid biosynthetic process	GO:0019745	Biological Process	1.41795e-28	84%
Blast2go	cycloartenol synthase activity	GO:0016871	Molecular Function	1.41795e-28	84%
Blast2go	vacuole	GO:0005773	Cellular Component	1.41795e-28	84%

Source	InterPros	Term	Type	Identity
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	-
Sma3	Terpene synthase, conserved site	IPR002365	-	-
Sma3	Squalene cyclase	IPR018333	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FQM1

Fln msg: Distance to subject end: 234 aas, your sequence is shorter than subject: 71 - 756

Fln protein: DDCPGDLNFWHRHPSCGSWPFSTRDHGWPISDCSSLGLKAALALAQLPQDIVGKPISSQRIFDCVDYLLSM

Protein Length: 72

Fln nts: AAGACGACTGTCCAGGTGACTTGAATTTCTGGCATCGCCATCCTTCTTGTGGTTCCTGGCCTTTCTCGACCCGAGATCATGGTTGGCCCATCTCAGACTGCTCCTCTCTAGGCTTAAAGGCTGCATTAGCGTTGGCACAATTGCCTCAAGACATTGTGGGGAAACCAATTTCATCACAACGGATTTTTGATTGTGTTGATTATTTGCTTTCCATGC

Fln Alignment:

AllPineV4_c41740___DDCPGDLNFWHRHPSCGSWPFSTRDHGWPISDCSSXXXXXXXXXXXXPQDIVGKPISSQRIFDCVDYLLSM
Q9FQM1_______________EDCPGDLNFWYRHISNGAWPFSTRDHGWPISDCSSEGLKAALALSQLPQDIVGKPIPSQRIFDCVNLMLSM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain