SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43896

Length: 564 nt

UniGene Fasta

>sp_v2.0_unigene43896
TACTGCTGAGCCCCTCTGAGATTGCAGACATCATCATAGATTTCGCAGATTCATCGACGGGTGAGGCGATTCTCACTAACAGCGCTGCTTATCCATTCCCCTCTGGAGATTCAGTCAATAAACTCAACAACAAAGTCATGAAATTCGTGATTGAGAAAACGAAAGAAACTGCCAAGAAACAGCGCGACAGCCGCATTCCAGAGAGATTGGTTCGATACCCTATTCCCAACAAGAATGTTTCCGCTCGGACGCGTTATATTACATTGTACGAATACGAAAGCGCTTCGGGAGAACCGACCAATTTGTTCATCAACGGGTTACTGTTTGGGGCACCAGCTACTGAGACGCCGAGGCAGGGAACGAGCGAATTATGGCATATCATCAACCTGACTGATGACAACCATCCAATCCACATTCATCTCGGATTGTTTTTCGTCCTCAAGCAAACAAAGCTGTTGAAATTTGAGGAGTTTAAGAGTTGCATGCAGAAGAAAACAACGCATTGAGATGCCAGATAAAGAAGCATGCAAAGGGTCGAGTGATGCCACCTCCTGCTAACGAGAG

Ace file of the UniGene sp_v2.0_unigene43896

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LPR2; LPR2 (Low Phosphate Root2); copper ion binding / oxidoreductase	-	-	3.9937e-43	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	multi-copper oxidase type i family protein	-	-	0.0	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on diphenols and related substances as donors, With oxygen as acceptor.	EC:1.10.3.-	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Betalain biosynthesis	00965	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	73%
Blast2go	auxin polar transport	GO:0009926	Biological Process	73%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	73%
Blast2go	meristem maintenance	GO:0010073	Biological Process	73%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	73%
Blast2go	indeterminate inflorescence morphogenesis	GO:0048283	Biological Process	73%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	73%
Blast2go	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	GO:0016682	Molecular Function	73%
Blast2go	cell wall	GO:0005618	Cellular Component	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	73%
Blast2go	response to karrikin	GO:0080167	Biological Process	73%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRY9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 62 aas, your sequence is shorter than subject: 168 - 583

Fln protein: LLSPSEIADIIIDFADSSTGEAILTNSAAYPFPSGDSVNKLNNKVMKFVIEKTKETAKKQRDSRIPERLVRYPIPNKNVSARTRYITLYEYESASGEPTNLFINGLLFGAPATETPRQGTSELWHIINLTDDNHPIHIHLGLFFVLKQTKLLKFEEFKSCMQKKTTH*

Protein Length: 169

Fln nts: TACTGCTGAGCCCCTCTGAGATTGCAGACATCATCATAGATTTCGCAGATTCATCGACGGGTGAGGCGATTCTCACTAACAGCGCTGCTTATCCATTCCCCTCTGGAGATTCAGTCAATAAACTCAACAACAAAGTCATGAAATTCGTGATTGAGAAAACGAAAGAAACTGCCAAGAAACAGCGCGACAGCCGCATTCCAGAGAGATTGGTTCGATACCCTATTCCCAACAAGAATGTTTCCGCTCGGACGCGTTATATTACATTGTACGAATACGAAAGCGCTTCGGGAGAACCGACCAATTTGTTCATCAACGGGTTACTGTTTGGGGCACCAGCTACTGAGACGCCGAGGCAGGGAACGAGCGAATTATGGCATATCATCAACCTGACTGATGACAACCATCCAATCCACATTCATCTCGGATTGTTTTTCGTCCTCAAGCAAACAAAGCTGTTGAAATTTGAGGAGTTTAAGAGTTGCATGCAGAAGAAAACAACGCATTGAGATGCCAGATAAAGAAGCATGCAAAGGGTCGAGTGATGCCACCTCCTGCTAACGAGAG

Fln Alignment:

AllPineV4_c41731___LLSPSEXXXXXXXXXXSSTGEAILTNSAAYPFPSGDSVNKLNNKVMKFVIEKTKETAKKQRDSRIPERLVRYPIPNKNVSARTRYITLYEYESASGEPTNLFINGLLFGAPATETPRQGTSELWHIINLTDDNHPIHIHLGLFFVLKQTKLLKFEEFKSCMQKK
B8LRY9_______________LLGPSELADIVIDFTDSPTGEAILTNDAVYPYPSGDPVDHLNSKVMKFVIESKRGALSSHDESRIPEKLIEYRRPLKESAAHTRYITMYEYESASEEPTHLFFNGLPYDAPATETPRQGTSELWHVIDLTDDNHPLHIHLGLFVVLQQTELLKLDEFKACMQKQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain