SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43853

Length: 420 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43853
GCTGAAACCAAGAACTCTGTCTGTCTGATCAGGCTGTATCATGGCCTACAAGCTTTTGAGATTTTGGCTTGAATTTCAGGCCTTACTAGTCCTCTTTCCACTGGCTCTGAGTGTCTCTCAGGAGGGCTTGGTTTTGCTGGAAGTGAAGAAAGAACTGAGTGACCCCAATGGATTTCTTGGTAACTGGAAGGCAGAGGACGATTCTCCCTGCAAATGGAGGGGTATCTCATGTGACCAGAGCTCAAAATCGGTGGTGGGGATTGACCTAAGCAGCGGAGGTTTAGTTGGGGTTTTTCCTAGTGTCGTTTGCAATCTTCCACAGCTGAGAAATCTGTCGTTGGGGAATAACAATATTGGTTCAATATTACCTCGCAACCTTTCCATGTGCAGGCAGCTTCAGCGCTTGAATTTATCGCAGAA

Ace file of the UniGene sp_v2.0_unigene43853 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like protein kinase HSL1 n=2 Tax=Arabidopsis RepID=HSL1_ARATH	-	-	3.0e-23	46%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	44%
Blast2go	leucine-rich repeat receptor-like protein kinase	-	-	1.00292e-26	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of seed germination	GO:0010030	Biological Process	1.00292e-26	63%
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.00292e-26	63%
Blast2go	regulation of seed maturation	GO:2000034	Biological Process	1.00292e-26	63%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Distance to subject end: 870 aas, your sequence is shorter than subject: 126 - 998

Fln protein: MAYKLLRFWLEFQALLVLFPLALSVSQEGLVLLEVKKELSDPNGFLGNWKAEDDSPCKWRGISCDQSSKSVVGIDLSSGGLVGVFPSVVCNLPQLRNLSLGNNNIGSILPRNLSMCRQLQRLNLSQ

Protein Length: 127

Fln nts: GCTGAAACCAAGAACTCTGTCTGTCTGATCAGGCTGTATC_-_ATGGCCTACAAGCTTTTGAGATTTTGGCTTGAATTTCAGGCCTTACTAGTCCTCTTTCCACTGGCTCTGAGTGTCTCTCAGGAGGGCTTGGTTTTGCTGGAAGTGAAGAAAGAACTGAGTGACCCCAATGGATTTCTTGGTAACTGGAAGGCAGAGGACGATTCTCCCTGCAAATGGAGGGGTATCTCATGTGACCAGAGCTCAAAATCGGTGGTGGGGATTGACCTAAGCAGCGGAGGTTTAGTTGGGGTTTTTCCTAGTGTCGTTTGCAATCTTCCACAGCTGAGAAATCTGTCGTTGGGGAATAACAATATTGGTTCAATATTACCTCGCAACCTTTCCATGTGCAGGCAGCTTCAGCGCTTGAATTTATCGCAGAA

Fln Alignment:

AllPineV4_c41686___ALSVSQEGXXXXXXXXXLSDPNGFLGNWKAEDDSPCKWRGISCDQSSKSVVGIDLSSGGLVGVFPSVVCNLPQLRNLSLGNNNIGSILPRNLSMCRQLQRLNLSQ
Q19AV8_______________AIRGSQEGLILQELKRGFDDPLEVFRNWNEHDNSPCNWTGITCDAGEKFVEEVDLSNTNIIGPFPSVVCRIDGLKKLPLADNYVNGSIPADLRRCRKLGYLDLSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain