SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43821

Length: 340 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43821
TGGCATCCCTGCGAATACAACCAACGCCATTTACTCAAAGGCATCCAAGTGGCAATTTGAAGCCGACAAGCCATTATTGTTGATAGTTAAAGATGCAATTGCGAATGAAGCAAATTCTGAATATGGATTTGGGATTGTGAATGGTGAAGGTGTTGGAGGACTGCCTCAAGTAGAAAAAAGCAAGTTTGTTTCCACTGCTGTTCATTTTTATTCATTAAGATGCCATAGATATGTACATCAATTAGGGTTCCAGTCGGCTATTTATGCAGTTGGATGCAGCTCTCGTGCACTAGCTGTAGCCCTTGCTACACAGATATGCTGTTTTGATCCTGCTACACTT

Ace file of the UniGene sp_v2.0_unigene43821 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	breast carcinoma amplified sequence 3-like protein [Oryza sativa Japonica Group]	-	-	6.0e-09	57%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	43%
Blast2go	protein	-	-	5.49283e-13	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	WD40 repeat	IPR001680	-	0.0	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TNK8

Fln msg: Distance to subject end: 549 aas, your sequence is shorter than subject: 113 - 784

Fln protein: GIPANTTNAIYSKASKWQFEADKPLLLIVKDAIANEANSEYGFGIVNGEGVGGLPQVEKSKFVSTAVHFYSLRCHRYVHQLGFQSAIYAVGCSSRALAVALATQICCFDPATL

Protein Length: 114

Fln nts: TGGCATCCCTGCGAATACAACCAACGCCATTTACTCAAAGGCATCCAAGTGGCAATTTGAAGCCGACAAGCCATTATTGTTGATAGTTAAAGATGCAATTGCGAATGAAGCAAATTCTGAATATGGATTTGGGATTGTGAATGGTGAAGGTGTTGGAGGACTGCCTCAAGTAGAAAAAAGCAAGTTTGTTTCCACTGCTGTTCATTTTTATTCATTAAGATGCCATAGATATGTACATCAATTAGGGTTCCAGTCGGCTATTTATGCAGTTGGATGCAGCTCTCGTGCACTAGCTGTAGCCCTTGCTACACAGATATGCTGTTTTGATCCTGCTACACTT

Fln Alignment:

AllPineV4_c41651___FEADKPLLLIVKD--AIANEANSEYXXXXXXXXXXXGLPQVEKSKFVSTAVHFYSLRCHRYVHQLGFQSAIYAVGCSSRALAVALATQICCFDPATL
A9TNK8_______________FKESRPLLLVVTSDATVCGSESAAGFPGDDVAGSGGTTVGLEPPQFVPTVIQFYSLRNHSYVHGLRLHTGILAVRCSSRFVAVALASQICCFDAGTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain