SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43801

Length: 422 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43801
ACAAGAACTCCTCTTACTTCGTTGAATGGATCCCCAACAACATCAAGTCATCCATCTGTGATATCCCACCAAAGGGTCTTAAGATGGCTGTTACTTTCATTGGTAACTCCACCGCCATCCAAGAAATGTTCAAGAGAGTCGCTGAACAATTCACTGCTATGTTCAGAAGAAAGGCTTTCCTCCATTGGTACACCGGTGAAGGTATGGACGAAATGGAATTCACTGAAGCCGAATCCAACATGAACGATTTGGTCTCTGAATACCAACAATACCAAGACGCCACCGCTGAAGAAGAAGAAATGGACGAGGAAGGTGAAGGCGAAAACGCATAAGCTGGAAAGCTTTTGTGAGCAATAAGGGTCTGATTTAGATATTGTACGAATTCTATAGATGATTGACTATACTTCCGTAGAGATGAGATA

Ace file of the UniGene sp_v2.0_unigene43801 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-tubulin, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LMN4_9ALVE	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	alpha-	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	mitotic cell cycle	GO:0000278	Biological Process	98%
Blast2go	spindle assembly	GO:0051225	Biological Process	98%
Blast2go	MHC class I protein binding	GO:0042288	Molecular Function	98%
Blast2go	structural constituent of cytoskeleton	GO:0005200	Molecular Function	98%
Blast2go	cytosol	GO:0005829	Cellular Component	98%
Blast2go	microtubule	GO:0005874	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT51

Fln msg: your sequence is shorter than subject: 110 - 444

Fln protein: KNSSYFVEWIPNNIKSSICDIPPKGLKMAVTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEEMDEEGEGENA*

Protein Length: 111

Fln nts: ACAAGAACTCCTCTTACTTCGTTGAATGGATCCCCAACAACATCAAGTCATCCATCTGTGATATCCCACCAAAGGGTCTTAAGATGGCTGTTACTTTCATTGGTAACTCCACCGCCATCCAAGAAATGTTCAAGAGAGTCGCTGAACAATTCACTGCTATGTTCAGAAGAAAGGCTTTCCTCCATTGGTACACCGGTGAAGGTATGGACGAAATGGAATTCACTGAAGCCGAATCCAACATGAACGATTTGGTCTCTGAATACCAACAATACCAAGACGCCACCGCTGAAGAAGAAGAAATGGACGAGGAAGGTGAAGGCGAAAACGCATAA___GCTGGAAAGCTTTTGTGAGCAATAAGGGTCTGATTTAGATATTGTACGAATTCTATAGATGATTGACTATACTTCCGTAGAGATGAGATA

Fln Alignment:

AllPineV4_c41621___KNSSYFVEWIPNNIKSSICDIPPKGLKMAVTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT
C0PT51_______________KNSSYFVEWIPHNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT

SSRs (tot: 1)

Start position	End position	Sequence	Length
124	135	TTC TTC TTC TTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain