SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43701

Length: 183 nt

UniGene Fasta

>sp_v2.0_unigene43701
TTATGATATTGGGGGCCGGACCGATTGTCATAGGCCAAGCCTGTGAGTTTGATTACTCTGGAACTCAGGCATGCAAGGCCCTGAAGGAAGAAGGGTATGAGGTCATTCTCATTAACTCCAATCCTGCCACTATTATGACCGATCCCGATTTGGCCGACAGGACATATACTTACCCCCATTCGC

Ace file of the UniGene sp_v2.0_unigene43701

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SK20_RICCO	-	-	1.0e-24	94%
FL-Next	tr=ATP binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	94%
Blast2go	carbamoyl phosphate synthase large subunit	-	-	1.89748e-29	94%

Source	InterPros	Term	Type	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	IPR005480	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, N-terminal	IPR005481	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, CPS-domain	IPR005483	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit	IPR006275	-	-
Sma3	Methylglyoxal synthase-like domain	IPR011607	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	ATP-grasp fold, subdomain 1	IPR013815	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3		IPR013817	-	-
Sma3	Alcohol dehydrogenase, iron-type, conserved site	IPR018211	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SK20

Fln msg: Distance to subject end: 483 aas, your sequence is shorter than subject: 60 - 1197

Fln protein: MILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPDLADRTYTYPHS

Protein Length: 61

Fln nts: TTATGATATTGGGGGCCGGACCGATTGTCATAGGCCAAGCCTGTGAGTTTGATTACTCTGGAACTCAGGCATGCAAGGCCCTGAAGGAAGAAGGGTATGAGGTCATTCTCATTAACTCCAATCCTGCCACTATTATGACCGATCCCGATTTGGCCGACAGGACATATACTTACCCCCATTCGC

Fln Alignment:

AllPineV4_c41508___MILGAGPIVIGQACEFDYSGTQACKALKEEGYEVILINSNPATIMTDPDLADRTYTYP
B9SK20_______________MILGAGPIVIGQACEFDYSGTQACKALKEEGYDVILINSNPATIMTDPDLADRTYIAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain