SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43624

Length: 494 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43624
AGCTGCTGTAGATCTATTGAAAAAACAAGTGGTGGCCATAATAGGACCACAAACATCGCAAGAAGCCGGCTTCGTGATAGATCTGTGTACTGCTTCGAAGGTGCCAATGATTTCATTCTCTGTAACGGATCCCTTGCTGTCTGCCCACCGCTATCCCTATTTCATCCGTTTGCCTCATAGCGACGCCGTCCAGGCCGACGCCATTGCAGCGCTGGTCGAATACTACGGCTGGAGAAAGTCGTGGCCGTCTACGCCGACACGATTACGGCACCGGCATGCTGCCCTTTTTGACCGATTCTCTCAGTAACGTGGGATGCGAAATCGCTTACAGATCGGCCATTCCAGCGAACGCAAATGGAAGTGCTACAAGAGCGAAGCTTTCCGAGCTGAAGGACATGCAGATCACTAGAGTTTTCGTTGTTCACATGACTTTAGAACTGGGCACTCTTTTTCTTCTCAGAAGCTCGGAAAGATGGGGATGATGAACAATAGTG

Ace file of the UniGene sp_v2.0_unigene43624 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate receptor n=1 Tax=Sorghum bicolor RepID=C5XD09_SORBI	-	-	3.0e-26	56%
FL-Next	sp=Glutamate receptor 2.2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	7.01468e-26	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	7.01468e-26	70%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	GPCR, family 3, gamma-aminobutyric acid receptor, type B	IPR002455	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SHV1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 669 aas, your sequence is shorter than subject: 102 - 920

Fln protein: AAVDLLKKQVVAIIGPQTSQEAGFVIDLCTASKVPMISFSVTDPLLSAHRYPYFIRLPHSDAVQADAIAALVEYYGWRKSWPSTPTRLRHRHAALFDRFSQ*

Protein Length: 103

Fln nts: AGCTGCTGTAGATCTATTGAAAAAACAAGTGGTGGCCATAATAGGACCACAAACATCGCAAGAAGCCGGCTTCGTGATAGATCTGTGTACTGCTTCGAAGGTGCCAATGATTTCATTCTCTGTAACGGATCCCTTGCTGTCTGCCCACCGCTATCCCTATTTCATCCGTTTGCCTCATAGCGACGCCGTCCAGGCCGACGCCATTGCAGCGCTGGTCGAATACTACGGCTGGAGAAAGTCGTGGCCGTCTACGCCGACACGATTACGGCACCGGCATGCTGCCCTTTTTGACCGATTCTCTCAGTAACGTGGGATGCGAAATCGCTTACAGATCGGCCATTCCAGCGAACGCAAATGGAAGTGCTACAAGAGCGAAGCTTTCCGAGCTGAAGGACATGCAGATCACTAGAGTTTTCGTTGTTCACATGACTTTAGAACTGGGCACTCTTTTTCTTCTCAGAAGCTCGGAAAGATGGGGATGATGAACAATAGTG

Fln Alignment:

AllPineV4_c41419___AAVDLLK-KQVVAIIGPQTSQEAGFVIDLCTASKVPMISFSVTDPLLSAHRYPYFIRLPHSDAVQADAIAALVEYYGWRKSWP
Q9SHV1_______________AAIDLIKNKQVKAILGPWTSMQAHFLIEIGQKSRVPVVSYSATSPSLTSLRSPYFFRATYEDSSQVHAIKAIIKLFGWREVVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain