SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43608

Length: 489 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43608
GGAAGTGATCAGAGTACAATGTTTGATGACGTTCATGTGCTTAACACAAACACTTTACAGTGGAACAGTCCAGTTTTAAAGGGTTCTGTTGAAGTTAGATGCAGGAGCACTCATGCTGCAGTTTTGCACCCTTTAGAGAGCAGAGCCATTATGATTCATGGAGGTTATGGAGATTATAGAAATAATGATCCTCACTGGTTGGGGGATCTTTCTCTTCTTCATACAGGTAAACAGATTCATTGGAGTGGAATGCATTGAATCCTGGTGGAAGAGTCCCATGTGCAAGAGGTTACCATTCCTTGACTACTGTTGGAGCATATGGTGTTCTATTCGGGGGGAAAGGTGATGCTGGAATTGTCAAAGAAGATTGCTTGAGCATATATGATGTAATGAAAAATAAATGGATCATTCCTAAAGTTCAAGGAGATGTCCCATTAGCACGTTCAAATCATGCAGCCACTTTGATGGATCCTGATTTAATTATTATTC

Ace file of the UniGene sp_v2.0_unigene43608 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kelch domain-containing protein 2 [Homo sapiens] ref\|XP_002824766.1\| PREDICTED: kelch domain-containing protein 2-like [Pongo abelii] ref\|XP_509933.3\| PREDICTED: kelch domain-containing protein 2 [Pan troglodytes] sp\|Q9Y2U9.1\|KLDC2_HUMAN RecName: Full=Kel	-	-	2.0e-07	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	protein	-	-	2.88518e-38	54%

Source	InterPros	Term	Type	Identity
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPX6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 312 aas, your sequence is shorter than subject: 162 - 665

Fln protein: K*SEYNV**RSCA*HKHFTVEQSSCKGFC*S*MQEHSCCSFAPFREQSHYDSWRLWRL*K**SSLVGGSFSSSYR*TDSLEWNALNPGGRVPCARGYHSLTTVGAYGVLFGGKGDAGIVKEDCLSIYDVMKNKWIIPKVQGDVPLARSNHAATLMDPDLIII

Protein Length: 163

Fln nts: GGAAGTGATCAGAGTACAATGTTTGATGACGTTCATGTGCTTAACACAAACACTTTACAGTGGAACAGTCCAGTTgTAAAGGGTTCtGTTGAAGTTAGATGCAGGAGCACTCATGCTGCAGTTTTGCACCCTTTAGAGAGCAGAGCCATTATGATTCATGGAGGTTATGGAGATTATAGAAATAATGATCCTCACTGGTTGGGGGATCTTTCTCTTCTTCATACAGGTAAACAGATTCATTGGAGTGGAATGCATTGAATCCTGGTGGAAGAGTCCCATGTGCAAGAGGTTACCATTCCTTGACTACTGTTGGAGCATATGGTGTTCTATTCGGGGGGAAAGGTGATGCTGGAATTGTCAAAGAAGATTGCTTGAGCATATATGATGTAATGAAAAATAAATGGATCATTCCTAAAGTTCAAGGAGATGTCCCATTAGCACGTTCAAATCATGCAGCCACTTTGATGGATCCTGATTTAATTATTATTC

Fln Alignment:

AllPineV4_c41403___TDSLEWNALNPGGRVPCARGYHSLTTVGAYGVLFGGKGDAGIVKEDCLSIYDVMKNKWIIPKVQGDVPLARSNHAATL
C0PPX6_______________TESCTWCVLKSYGKAPIARGGQSVTLVGSSLVMFGGEDSMRSLLND-LNILDLETMTWDAIEAVGTPPSPRSDHTATV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain