SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43574

Length: 359 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43574
ATGCTCAACCTTGAGAGGTTCTCTGTGAAATTCTTTGGGGACCTCAGTATAGAAAATACCACCATTCTAGATCCGAAACGAGTAAATTTTGGCAGTCAAGGTGGTGAAATGACTATCACTGAAATGGAAAAGGGAAAGCCACGTATGGCTAATGTAAAATCTACAGGTTGTGGCTGTGAAGGATTGGAGTTAAAATATATTCTACATCAATGATTTCTTTCATTTTTCGTTGTGCATGAACAGAGACAAGAATGCTACACAGGTGGAACTAGAGCGAGGGAGAGTTATTTACCAGGAGTTATCTAAAGAGAAAAGATTTGCTGATGTGACGTTGATGGCTTTGCAAAATGGAAAGGTTG

Ace file of the UniGene sp_v2.0_unigene43574 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Golgi-body localisation and RNA pol II promoter Fmp27 domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4I9T6_ARATH	-	-	6.0e-13	48%
FL-Next	tr=Putative uncharacterized protein Sb01g011950; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	44%
Blast2go	golgi-body localisation and rna pol ii promoter fmp27 domain-containing protein	-	-	1.06447e-14	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell growth	GO:0016049	Biological Process	1.06447e-14	64%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	1.06447e-14	64%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.06447e-14	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5WPM8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1890 aas, your sequence is shorter than subject: 71 - 2631

Fln protein: MLNLERFSVKFFGDLSIENTTILDPKRVNFGSQGGEMTITEMEKGKPRMANVKSTGCGCEGLELKYILHQ*

Protein Length: 72

Fln nts: ATGCTCAACCTTGAGAGGTTCTCTGTGAAATTCTTTGGGGACCTCAGTATAGAAAATACCACCATTCTAGATCCGAAACGAGTAAATTTTGGCAGTCAAGGTGGTGAAATGACTATCACTGAAATGGAAAAGGGAAAGCCACGTATGGCTAATGTAAAATCTACAGGTTGTGGCTGTGAAGGATTGGAGTTAAAATATATTCTACATCAATGATTTCTTTCATTTTTCGTTGTGCATGAACAGAGACAAGAATGCTACACAGGTGGAACTAGAGCGAGGGAGAGTTATTTACCAGGAGTTATCTAAAGAGAAAAGATTTGCTGATGTGACGTTGATGGCTTTGCAAAATGGAAAGGTTG

Fln Alignment:

AllPineV4_c41366___LNLERFSVKFFGDLSIENTTILDPKRVNFGSQGGEMTITEMEKGKPRMANVKSTGCGC
C5WPM8_______________LSLQKLSITYCGDANIVNMPIADPKRVNYGSQGGQVIVSVSADGTPRRASITSVLPGC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain