SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43481

Length: 396 nt

UniGene Fasta

>sp_v2.0_unigene43481
ATGGGATATGTCTCAGGTTTGTCCAAATTGAAAGCGATGAACTGCCTCATCACGCTTCTCTGAAATCTGCCTGCGACCTGACATTGGATCCGGAATTCTGCGTTTCTACAATGTCGAGCCTCTTTCCGGGATCATTGCGGCCAACTTCCGCAGATCTCGCCAGGATGGCTCTCAGGCTCGGCATTATCGAAGGACAAAGGGTGCTTCAAATAATTTCTCGCGTGCCACGATGGGTATTCAAAGGAAGGCAACTTGGTGCTATTGAAGATTGCCTGCAGTTGTACGATCTAACGTTGAACGACCTGAGCAAATCTTTGTCGAATGTTACTGCTGATTCTTTGAAATGGAGGCAGTCAGTTGACATTCAGACTTGGCTTCGTGCAGCTCTCACTAATC

Ace file of the UniGene sp_v2.0_unigene43481

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative pectin methylesterase (Fragment) n=1 Tax=Picea abies RepID=A5X523_PICAB	-	-	2.0e-10	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	pectinesterase like protein	-	-	7.64422e-12	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPS0

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 131 - 204

Fln protein: GICLRFVQIESDELPHHASLKSACDLTLDPEFCVSTMSSLFPGSLRPTSADLARMALRLGIIEGQRVLQIISRVPRWVFKGRQLGAIEDCLQLYDLTLNDLSKSLSNVTADSLKWRQSVDIQTWLRAALTN

Protein Length: 132

Fln nts: ATGGGATATGTCTCAGGTTTGTCCAAATTGAAAGCGATGAACTGCCTCATCACGCTTCTCTGAAATCTGCCTGCGACCTGACATTGGATCCGGAATTCTGCGTTTCTACAATGTCGAGCCTCTTTCCGGGATCATTGCGGCCAACTTCCGCAGATCTCGCCAGGATGGCTCTCAGGCTCGGCATTATCGAAGGACAAAGGGTGCTTCAAATAATTTCTCGCGTGCCACGATGGGTATTCAAAGGAAGGCAACTTGGTGCTATTGAAGATTGCCTGCAGTTGTACGATCTAACGTTGAACGACCTGAGCAAATCTTTGTCGAATGTTACTGCTGATTCTTTGAAATGGAGGCAGTCAGTTGACATTCAGACTTGGCTTCGTGCAGCTCTCACTAATC

Fln Alignment:

AllPineV4_c41266___LKSACDLTLDPEFCVSTMSSLFPGSLRPTSADLARMALRLGIIEGQRVLQIISRVP--RWVFKGRQLGAIEDCLQLYDLTLNDLSKSLSNVTA---DSLKWRQSVDIQTWLRAALTN
A9NPS0_______________IKTSCNVTLYPQLCVSSLSS-YAGSLKATQSNLVNVALQVSLVTARNVSVWAAGMKSRRALMSRRERAALGDCIEDFGDTADQIRQSLAELKKLRRNTFKFQMS-NVETWMSAALTN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain