SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43414

Length: 417 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene43414
ATGGGGAATGGCCAATACCAAAAACGCACATGAAGTACGAAGCTTTATGGGTTTAGCTGGTTACTACCGAAGATTTGTAGAGGGATTCTCCAAAATTGCAAAGCCGATTACAACCCTTCAGCATAAAGGTGTTAAGCATGAATGGATTGGGGAATGTAATAAAGCATTCTCTGAACTCAAAAGACTACTCACCAGTGCACCAATCCTAAGAGTTCCTGATATGGGCAAAGATTTTATTGTATGTACTGATGCATCCAAGCAAGGGCTGGGTGCAGTGTTGATGCAGGATAGAGGAGTGATAGTGTATGTTTCCAGAAAGTTAAAACATCATGAAGAACTCTATGTTACTCATTATTTAGAGTTAGCCGCTGTAGTACTAGCTTTAAAGATCTAGAGACATTATCTAGTAGGACGAAA

Ace file of the UniGene sp_v2.0_unigene43414

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, Ty3-gypsy subclass n=5 Tax=Oryza sativa RepID=Q2R1L3_ORYSJ	-	-	2.0e-40	63%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	41%
Blast2go	retrotransposon ty3-gypsy subclass	-	-	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase A2A, retrovirus, catalytic	IPR001995	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: your sequence is shorter than subject: 131 - 158

Fln protein: WGMANTKNAHEVRSFMGLAGYYRRFVEGFSKIAKPITTLQHKGVKHEWIGECNKAFSELKRLLTSAPILRVPDMGKDFIVCTDASKQGLGAVLMQDRGVIVYVSRKLKHHEELYVTHYLELAAVVLALKI*

Protein Length: 132

Fln nts: ATGGGGAATGGCCAATACCAAAAACGCACATGAAGTACGAAGCTTTATGGGTTTAGCTGGTTACTACCGAAGATTTGTAGAGGGATTCTCCAAAATTGCAAAGCCGATTACAACCCTTCAGCATAAAGGTGTTAAGCATGAATGGATTGGGGAATGTAATAAAGCATTCTCTGAACTCAAAAGACTACTCACCAGTGCACCAATCCTAAGAGTTCCTGATATGGGCAAAGATTTTATTGTATGTACTGATGCATCCAAGCAAGGGCTGGGTGCAGTGTTGATGCAGGATAGAGGAGTGATAGTGTATGTTTCCAGAAAGTTAAAACATCATGAAGAACTCTATGTTACTCATTATTTAGAGTTAGCCGCTGTAGTACTAGCTTTAAAGATCTAG___AGACATTATCTAGTAGGACGAAA

Fln Alignment:

AllPineV4_c41185___GMANTKNAHEVRSFMGLAGYYRRFVEGFSKIAKPITTLQHKGVKHEWIGECNKAFSELKRLLTSAPILRVPDMGKDFI
P92523_______________GWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain