SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43277

Length: 520 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43277
AAATTCATGGTTACACAATTAGAAATGATTTATTATCTGATGTATTTGTTGGAAACGCCCTGACAGACATGTATGCTAAATGTGGGAGCATAAAATATGCACGCAAGTTGTTTGACAACCTGTCTCAAAAAGATGTTGTCTCATGGACCATAATGATTGCAGTGTATGTTAAAAATGGGCATGGTAAAGATACTCTCCTTCTTTTTGACCAAATGCAAGAGGCAGGCGTTATGCCTAATCACATAACCTTCATCGCTATCTTTATGCCTGCAGGCACGCAGGCTTGGTTGAGGAAGGCTGGAAGTACTTCAATCTCATGAGCCTTGACTGGCACATCACACCGAATCTGGAACACCATGCCTGCATGGTTGATCTCCTTTGCCACGCTGGACGCCTAGATGAGGCATATAACTTTATCAAAGGTATGCCACTGGAACCTGATGCTAGCATCTGGGGTACATTGCTTGAAGCTTGCAAAAGACATTGCAATATAGAGCCTGGAGCGCTTGTTGCAGATCGA

Ace file of the UniGene sp_v2.0_unigene43277 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative pentatricopeptide repeat protein n=5 Tax=Malvoideae RepID=B2ZAT1_9ROSI	-	-	2.00386e-43	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	pentatricopeptide repeat-containing protein	-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	72%
Blast2go	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	72%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	72%
Blast2go	leaf development	GO:0048366	Biological Process	72%

Source	InterPros	Term	Type	Identity
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Zinc finger-XS domain	IPR005381	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 260 and 260, Distance to subject end: 178 aas, your sequence is shorter than subject: 173 - 795

Fln protein: IHGYTIRNDLLSDVFVGNALTDMYAKCGSIKYARKLFDNLSQKDVVSWTIMIAVYVKNGHGKDTLLLFDQMQEAGVMPNHITFIAxxYACRHAGLVEEGWKYFNLMSLDWHITPNLEHHACMVDLLCHAGRLDEAYNFIKGMPLEPDASIWGTLLEACKRHCNIEPGALVADR

Protein Length: 174

Fln nts: AAATTCATGGTTACACAATTAGAAATGATTTATTATCTGATGTATTTGTTGGAAACGCCCTGACAGACATGTATGCTAAATGTGGGAGCATAAAATATGCACGCAAGTTGTTTGACAACCTGTCTCAAAAAGATGTTGTCTCATGGACCATAATGATTGCAGTGTATGTTAAAAATGGGCATGGTAAAGATACTCTCCTTCTTTTTGACCAAATGCAAGAGGCAGGCGTTATGCCTAATCACATAACCTTCATCGCTxxxxxxTATGCCTGCAGGCACGCAGGCTTGGTTGAGGAAGGCTGGAAGTACTTCAATCTCATGAGCCTTGACTGGCACATCACACCGAATCTGGAACACCATGCCTGCATGGTTGATCTCCTTTGCCACGCTGGACGCCTAGATGAGGCATATAACTTTATCAAAGGTATGCCACTGGAACCTGATGCTAGCATCTGGGGTACATTGCTTGAAGCTTGCAAAAGACATTGCAATATAGAGCCTGGAGCGCTTGTTGCAGATCGA

Fln Alignment:

AllPineV4_c41001___IHGYTIRNDLLSDVFVGNALTDMYAKCGSIKYARKLFDNLSQKDVVSWTIMIAVYVKNGHGKDTLLLFDQMQEAGVMPNHITFIAIFMPALYACRHAGLVEEGWKYFNLMSLDWHITPNLEHHACMVDLLCHAGRLDEAYNFIKGMPLEPDASIWGTLLEACKRHCNIEPGALVA
B8LQA8_______________IHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSV-LPALTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain