SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43187

Length: 390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene43187
GGGATTCAGTCCCCCGGAGCGCTGGGGTCACTCTTCCTGCCATTACTATAGCTCGCTCTACGTCTTTGGGGGATGCTGCGGGGGATTGCACTTCGACGAAGTGGTGGCGTTGGATTTGAAAACCTTGAAATGGAGATCGCTCCAGACAAGTGGAGAACAGCCAGGCAGCCGAGATAGCCACAGTGCTGTTACTGTCGGTGAAAGAATGGTTATGTTCGGAGGAACCAATGGGTCCAAGAAAATGAACGAGCTCCACGTTCTTGATTTGCAGAGCGGGCAATGGACGCAGCCGGCCGTAAAAGGAAATCCGCCGAGTGCCCGCGAGAGCCACAGCGCGACGCTGGTCGGCGACAGAAAGATGGTAATATTTGGCGGTAGCGGGGAGGGGAA

Ace file of the UniGene sp_v2.0_unigene43187 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kelch repeat-containing protein [Dictyostelium discoideum AX4] gb\|EAL72725.1\| Kelch repeat-containing protein [Dictyostelium discoideum AX4]	-	-	7.0e-23	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	kelch repeat	-	-	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPX6

Fln msg: Distance to subject end: 253 aas, your sequence is shorter than subject: 129 - 665

Fln protein: GFSPPERWGHSSCHYYSSLYVFGGCCGGLHFDEVVALDLKTLKWRSLQTSGEQPGSRDSHSAVTVGERMVMFGGTNGSKKMNELHVLDLQSGQWTQPAVKGNPPSARESHSATLVGDRKMVIFGGSGEG

Protein Length: 130

Fln nts: GGGATTCAGTCCCCCGGAGCGCTGGGGTCACTCTTCCTGCCATTACTATAGCTCGCTCTACGTCTTTGGGGGATGCTGCGGGGGATTGCACTTCGACGAAGTGGTGGCGTTGGATTTGAAAACCTTGAAATGGAGATCGCTCCAGACAAGTGGAGAACAGCCAGGCAGCCGAGATAGCCACAGTGCTGTTACTGTCGGTGAAAGAATGGTTATGTTCGGAGGAACCAATGGGTCCAAGAAAATGAACGAGCTCCACGTTCTTGATTTGCAGAGCGGGCAATGGACGCAGCCGGCCGTAAAAGGAAATCCGCCGAGTGCCCGCGAGAGCCACAGCGCGACGCTGGTCGGCGACAGAAAGATGGTAATATTTGGCGGTAGCGGGGAGGGGAA

Fln Alignment:

AllPineV4_c40868___GFSPPERWGHSSCHYYSSLYVFGGCCGGLHF-DEVVALDLKTLKWRSLQTSGEQPGSRDSHSAVTVGER-MVMFGGTNGSKKMNELHVLDLQSGQWTQPAVKGNPPSARESHSATLVGDRKMVIFGGSGE
C0PPX6_______________GKAPIARGGQSVTLVGSSLVMFGGEDSMRSLLNDLNILDLETMTWDAIEAVGTPPSPRSDHTATVHANRYLLIFGGGSHSTCFNDLHVLDLQSMEWSRPKMQGTLPTPRAGHAGVTIGENWYIVGGGDNK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain