SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene43166

Length: 346 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene43166
GTAATGACCTGGTTGGTCTGCACTGCTTCGTCACCTCAGCGATCAACTTATTTCATCCTTGGATGCTGTGAACAGCATTCTTGCTGCAGACTTTGTCCATGCAGCTATTCATGATGCAAAAGATCTGGAGTCTACAATTTTAACAAAATTTCGAACAAGGGAGAAGGATCGCCTCACAACTACGAAGGAGGATGAATCTCTAGAGATCAAATTAGATGACGAAGCATGTTCTGGTTTTCGAGATAGGCTTTTGCCTCTTGTCATTGGCTTGCTGAGGACGGCAAAGCTTCCAGCCATATTAAGGGTTTATAGGGACACCCTGATTGCAGACATCAAGGCCTCCATT

Ace file of the UniGene sp_v2.0_unigene43166

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	51%
Blast2go	vacuolar protein sorting-associated protein 54-like	-	-	2.9518e-27	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	2.9518e-27	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	0.0	-
Sma3	Vps54-like	IPR012501	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I3H9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 625 aas, your sequence is shorter than subject: 115 - 1041

Fln protein: **PGWSALLRHLSDQLISSLDAVNSILAADFVHAAIHDAKDLESTILTKFRTREKDRLTTTKEDESLEIKLDDEACSGFRDRLLPLVIGLLRTAKLPAILRVYRDTLIADIKASI

Protein Length: 116

Fln nts: GTAATGACCTGGTTGGTCTGCACTGCTTCGTCACCTCAGCGATCAACTTATTTCATCCTTGGATGCTGTGAACAGCATTCTTGCTGCAGACTTTGTCCATGCAGCTATTCATGATGCAAAAGATCTGGAGTCTACAATTTTAACAAAATTTCGAACAAGGGAGAAGGATCGCCTCACAACTACGAAGGAGGATGAATCTCTAGAGATCAAATTAGATGACGAAGCATGTTCTGGTTTTCGAGATAGGCTTTTGCCTCTTGTCATTGGCTTGCTGAGGACGGCAAAGCTTCCAGCCATATTAAGGGTTTATAGGGACACCCTGATTGCAGACATCAAGGCCTCCATT

Fln Alignment:

AllPineV4_c40844___RHLSDQLISSLDAVNSILAADFVHAAIHDAKDLESTILTKFRTREKDRLTTTKEDESLEIKLDDEACSGFRDRLLPLVIGLLRTAKLPAILRVYRDTLIADIKASI
F6I3H9_______________RHLRDRVATSIDSINSILSAEFMRASIHDAGNMDAVILSNAKAGAS--IMTNGKDE--DVKLDEEETSNFRDRLLPFIIGLLRTAKLPSVLRIYRDTLTADMKTAI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
168	33		66		0.997464
171		66	33		0.997464
172			66	33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain